8 results found Sort:

GMOD
jbrowse GMOD
199
464
other
52
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
biology genomics bioinformatics genome-browser genome-annotation protein-annotation
Created 2009-01-16
8,129 commits to master branch, last one about a year ago
tariqdaouda
pyGeno tariqdaouda
50
311
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed gtf vcf snps cancer genome biology ensembl genomes medical genomics medicine csv-parser proteomics bioinformatics cancer-genomes genome-browser cancer-genomics genome-annotation genome-sequencing
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
kcleal
gw kcleal
7
282
mit
6
Genome browser and variant annotation
vcf bam-files cram-files genome-browser annotation-tool
Created 2022-07-07
934 commits to master branch, last one about a month ago
fanglu0411
sgs fanglu0411
19
126
unknown
10
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
sgs zarr schic scrna mudata scatac sceqtl anndata scmethylc multimodal single-cell spatial-omics visualization genome-browser
Created 2024-07-01
59 commits to main branch, last one 2 months ago
yatisht
usher yatisht
42
123
mit
12
Ultrafast Sample Placement on Existing Trees
usher sars-cov-2 phylogenetics genome-browser maximum-parsimony phylogenetic-placement
Created 2020-09-16
2,007 commits to master branch, last one 11 days ago
fmalmeida
bacannot fmalmeida
9
98
gpl-3.0
4
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
rgi barrnap phigaro nextflow pipeline prophages annotation ko-annotation genome-browser genome-analysis rrna-prediction virulence-genes virulence-factor insertion-sequences reproducible-research methylation-annotation mobile-genetic-elements genomic-islands-prediction prophage-sequences-prediction antimicrobial-genes-annotation
Created 2019-10-23
778 commits to master branch, last one 19 days ago
MoMI-G
MoMI-G MoMI-G
6
87
mit
7
Modular Multi-scale Integrated Genome Graph Browser
genome-graph genome-browser variation-graph structural-variants graph-genome-browser
Created 2018-02-06
392 commits to master branch, last one about a month ago
lidaof
eg-react lidaof
30
68
other
8
WashU Epigenome Browser
visualization genome-browser washu-epigenome-browser
Created 2017-07-26
1,312 commits to master branch, last one 2 months ago