5 results found Sort:

GMOD
jbrowse GMOD
199
464
other
52
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
biology genomics bioinformatics genome-browser genome-annotation protein-annotation
Created 2009-01-16
8,129 commits to master branch, last one about a year ago
elttaes
Revisiting-PLMs elttaes
10
60
mit
2
Exploring Evolution-aware & free protein language models as protein function predictors
esm1b pytorch alphafold benchmark stability alphafold2 msa-transformer msa-construction metal-ion-binding contact-prediction fitness-prediction protein-annotation function-prediction zero-shot-prediction protein-classification protein-language-model remote-homology-detection multiple-sequence-alignment
Created 2022-10-06
33 commits to main branch, last one about a month ago
westlake-repl
ProTrek westlake-repl
8
59
mit
3
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
mmseqs2 foldseek protein-alignment protein-annotation protein-prediction sequence-structure protein-pretraining contrastive-learning protein-language-model
Created 2024-05-21
44 commits to main branch, last one about a month ago
raghavagps
Pfeature raghavagps
21
55
other
5
A software package for computing features of peptides and proteins
pssm-profile bioinformatics protein-annotation function-annotation amino-acid-composition machine-learning-algorithms
Created 2019-01-16
360 commits to master branch, last one 5 months ago
PedroMTQ
mantis PedroMTQ
6
53
mit
3
A package to annotate protein sequences
hmmer mantis bioinformatics protein-annotation protein-function-prediction
Created 2020-06-02
257 commits to master branch, last one 11 months ago