Statistics for topic genomics

Official code repository for GATK versions 4 and up

Official git repository for Biopython (originally converted from CVS)

Earl Grey: A fully automated TE curation and annotation pipeline

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Oxford Nanopore's Basecaller

Earl Grey: A fully automated TE curation and annotation pipeline

Rapid standardisation and quality control of GWAS or QTL summary statistics

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Oxford Nanopore's Basecaller

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official git repository for Biopython (originally converted from CVS)

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

A comprehensive tutorial about GWAS and PRS

Official code repository for GATK versions 4 and up

MCHelper: An automatic tool to curate transposable element libraries

Earl Grey: A fully automated TE curation and annotation pipeline

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Find causal cell-types underlying complex trait genetics

Rapid standardisation and quality control of GWAS or QTL summary statistics

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Official git repository for Biopython (originally converted from CVS)

Genome size estimation from long read overlaps

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Oxford Nanopore's Basecaller

Genome size estimation from long read overlaps

Fast interval intersection library

MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses

Evaluating genome assemblies

Tandem repeat expansion detection or genotyping from long-read alignments

Genome size estimation from long read overlaps

Fast interval intersection library

Complex structural variant visualization for HiFi sequencing data

Official git repository for Biopython (originally converted from CVS)

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Oxford Nanopore's Basecaller

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Easily install and load packages from the tidyomcis ecosystem

Genome size estimation from long read overlaps

Matrix dissimilarity from the differences of Moments and sparsity

Application of pan-genome for population

AWS for Bioinformatics Researchers