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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Created
2017-11-23
2,915 commits to r1.8 branch, last one 16 days ago
🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
Created
2015-12-27
39 commits to master branch, last one 7 years ago
Official code repository for GATK versions 4 and up
Created
2014-12-02
4,734 commits to master branch, last one 6 days ago
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
Created
2013-01-23
213 commits to master branch, last one 2 years ago
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Created
2017-08-24
239 commits to master branch, last one 2 months ago
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Created
2020-06-11
66 commits to master branch, last one about a year ago
genes and genomes at your fingertips
Created
2016-12-16
770 commits to master branch, last one 3 months ago
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Created
2023-06-23
35 commits to main branch, last one 3 months ago
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created
2014-09-26
532 commits to bloody branch, last one 4 years ago
:microscope: Assemble large genomes using short reads
Created
2012-03-19
5,566 commits to master branch, last one 10 days ago
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Created
2016-06-07
581 commits to devel branch, last one about a year ago
GenomeTools genome analysis system.
Created
2013-07-04
13,980 commits to master branch, last one about a year ago
Genome annotation with AUGUSTUS
Created
2018-05-24
2,716 commits to master branch, last one 2 months ago
Scientific Large Language Models: A Survey on Biological & Chemical Domains
Created
2023-10-12
53 commits to main branch, last one about a month ago
A genome browser designed for complex structural variants and long reads.
Created
2016-06-30
282 commits to main branch, last one 28 days ago
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Created
2019-03-19
620 commits to master branch, last one 3 months ago
Nanopore sequence read simulator
Created
2015-11-05
364 commits to master branch, last one 25 days ago
This repository has no description...
Created
2018-01-13
412 commits to master branch, last one 3 months ago
Whole Genome Sequencing analysis, WGS analysis
Created
2023-06-25
39 commits to main branch, last one about a year ago
Next generation sequencing reads de novo assembler.
Created
2013-08-24
54 commits to master branch, last one about a year ago
Fast and accurately polish the genome generated by long reads.
Created
2019-05-08
68 commits to master branch, last one 2 months ago
Genomic Data Retrieval with R
Created
2014-08-05
2,423 commits to master branch, last one about a month ago
Viral genomics analysis pipelines
Created
2014-09-25
3,233 commits to master branch, last one 6 months ago
A visualization grammar and GPU-accelerated toolkit for genomic data
Created
2018-10-19
1,837 commits to master branch, last one about a month ago
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
Created
2023-11-09
95 commits to main branch, last one a day ago
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
Created
2020-10-04
209 commits to master branch, last one 5 months ago
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
Created
2023-10-11
14 commits to r1.8 branch, last one 3 months ago
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Created
2018-06-03
3,279 commits to master branch, last one 8 days ago
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Created
2020-04-26
854 commits to main branch, last one 14 days ago
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
Created
2017-05-11
170 commits to main branch, last one 3 months ago