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pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regula...
Created
2018-03-07
670 commits to master branch, last one 11 months ago
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Created
2023-06-23
35 commits to main branch, last one 3 months ago
Single-cell Transcriptome and Regulome Analysis Pipeline
Created
2019-07-16
614 commits to master branch, last one 3 years ago
netZooR is a network biology package implemented in R.
Created
2019-06-06
1,485 commits to master branch, last one about a month ago
netZooPy is a network biology package implemented in Python.
Created
2019-06-13
1,113 commits to master branch, last one 4 months ago
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
Created
2021-12-08
234 commits to main branch, last one 2 years ago
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
Created
2020-10-24
356 commits to main branch, last one 8 days ago