6 results found Sort:

aertslab
pySCENIC aertslab
184
458
gpl-3.0
18
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regula...
single-cell transcriptomics transcription-factors gene-regulatory-network
Created 2018-03-07
670 commits to master branch, last one 8 months ago
MAGICS-LAB
DNABERT_2 MAGICS-LAB
67
293
apache-2.0
10
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
dna covid genome splice dataset promoter promoters splice-site dna-training dna-processing language-model genome-analysis promoter-analysis transcription-factors transcription-factor-binding transcription-factor-binding-site
Created 2023-06-23
35 commits to main branch, last one 7 days ago
liulab-dfci
MAESTRO liulab-dfci
78
278
gpl-3.0
12
Single-cell Transcriptome and Regulome Analysis Pipeline
scrna-seq scatac-seq epigenetics snakemake-workflows transcription-factors gene-regulatory-networks
Created 2019-07-16
614 commits to master branch, last one 3 years ago
netZoo
netZooR netZoo
39
105
gpl-3.0
3
netZooR is a network biology package implemented in R.
transcription-factors gene-regulatory-network
Created 2019-06-06
1,484 commits to master branch, last one 2 months ago
lucidrains
tf-bind-transformer lucidrains
9
82
mit
8
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
transformers deep-learning gene-expression attention-mechanism transcription-factors artificial-intelligence transcription-factor-binding
Created 2021-12-08
234 commits to main branch, last one 2 years ago
netZoo
netZooPy netZoo
35
79
gpl-3.0
3
netZooPy is a network biology package implemented in Python.
transcription-factors gene-regulatory-network
Created 2019-06-13
1,113 commits to master branch, last one about a month ago