Search Results - RepositoryStats

nanopolish jts

159

572

mit

36

Signal-level algorithms for MinION data

science c-plus-plus epigenetics methylation bioinformatics genome-assembly

Created 2014-12-17

1,479 commits to master branch, last one about a year ago

SnapATAC r3fang

126

308

gpl-3.0

14

Analysis Pipeline for Single Cell ATAC-seq

sequencing epigenetics single-cell-analysis single-cell-atac-seq bioinformatics-pipeline machine-learning-algorithms

Created 2019-02-19

228 commits to master branch, last one 2 years ago

MAESTRO liulab-dfci

78

278

gpl-3.0

12

Single-cell Transcriptome and Regulome Analysis Pipeline

scrna-seq scatac-seq epigenetics snakemake-workflows transcription-factors gene-regulatory-networks

Created 2019-07-16

614 commits to master branch, last one 3 years ago

janggu BIMSBbioinfo

34

255

gpl-3.0

20

Deep learning infrastructure for genomics

genomics epigenetics deep-learning bioinformatics machine-learning

Created 2018-05-22

872 commits to master branch, last one 3 years ago

tombo nanoporetech

54

233

other

37

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

epigenetics

Created 2017-11-18

78 commits to master branch, last one about a year ago

ChIPseeker YuLab-SMU

76

230

unknown

20

:dart: ChIP peak Annotation, Comparison and Visualization

atac-seq chip-seq annotation comparison epigenetics epigenomics visualization

Created 2014-05-31

927 commits to devel branch, last one about a month ago

megalodon nanoporetech

30

198

other

21

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output...

guppy basecalling epigenetics variant-calling

Created 2019-06-20

1,149 commits to master branch, last one about a year ago

methylpy yupenghe

47

137

apache-2.0

4

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

nome-seq epigenetics calling-dmrs nome-seq-data dna-methylation functional-genomics bioinformatics-pipeline differential-methylation

Created 2016-06-20

250 commits to methylpy branch, last one about a year ago

deepsignal bioinfomaticsCSU

21

112

gpl-3.0

3

Detecting methylation using signal-level features from Nanopore sequencing reads

tensorflow epigenetics methylation bioinformatics nanopore-sequencing

Created 2018-12-11

209 commits to master branch, last one about a year ago

mgatk caleblareau

29

103

mit

7

mgatk: mitochondrial genome analysis toolkit

r python3 genomics genotype epigenetics single-cell mitochondrial

Created 2017-07-17

237 commits to master branch, last one 11 months ago

dmrseq kdkorthauer

14

54

mit

10

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

dmr inference epigenetics methylation bioconductor bisulfite-sequencing

Created 2017-07-14

290 commits to devel branch, last one 2 months ago

MrBiomics epigen

1

41

mit

5

MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses

r python modules recipes science genetics genomics research framework snakemake workflows automation biomedical epigenetics data-science bioinformatics next-generation-sequencing

Created 2022-03-28

88 commits to main branch, last one 5 days ago