13 results found Sort:

jts
nanopolish jts
159
568
mit
36
Signal-level algorithms for MinION data
science c-plus-plus epigenetics methylation bioinformatics genome-assembly
Created 2014-12-17
1,479 commits to master branch, last one about a year ago
r3fang
SnapATAC r3fang
126
306
gpl-3.0
14
Analysis Pipeline for Single Cell ATAC-seq
sequencing epigenetics single-cell-analysis single-cell-atac-seq bioinformatics-pipeline machine-learning-algorithms
Created 2019-02-19
228 commits to master branch, last one 2 years ago
liulab-dfci
MAESTRO liulab-dfci
77
279
gpl-3.0
12
Single-cell Transcriptome and Regulome Analysis Pipeline
scrna-seq scatac-seq epigenetics snakemake-workflows transcription-factors gene-regulatory-networks
Created 2019-07-16
614 commits to master branch, last one 3 years ago
BIMSBbioinfo
janggu BIMSBbioinfo
34
255
gpl-3.0
20
Deep learning infrastructure for genomics
genomics epigenetics deep-learning bioinformatics machine-learning
Created 2018-05-22
872 commits to master branch, last one 3 years ago
nanoporetech
tombo nanoporetech
54
231
other
37
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
epigenetics
Created 2017-11-18
78 commits to master branch, last one about a year ago
YuLab-SMU
ChIPseeker YuLab-SMU
75
227
unknown
20
:dart: ChIP peak Annotation, Comparison and Visualization
atac-seq chip-seq annotation comparison epigenetics epigenomics visualization
Created 2014-05-31
927 commits to devel branch, last one 22 days ago
nanoporetech
megalodon nanoporetech
30
197
other
21
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output...
guppy basecalling epigenetics variant-calling
Created 2019-06-20
1,149 commits to master branch, last one about a year ago
yupenghe
methylpy yupenghe
47
137
apache-2.0
4
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
nome-seq epigenetics calling-dmrs nome-seq-data dna-methylation functional-genomics bioinformatics-pipeline differential-methylation
Created 2016-06-20
250 commits to methylpy branch, last one about a year ago
bioinfomaticsCSU
deepsignal bioinfomaticsCSU
21
111
gpl-3.0
3
Detecting methylation using signal-level features from Nanopore sequencing reads
tensorflow epigenetics methylation bioinformatics nanopore-sequencing
Created 2018-12-11
209 commits to master branch, last one about a year ago
caleblareau
mgatk caleblareau
27
103
mit
7
mgatk: mitochondrial genome analysis toolkit
r python3 genomics genotype epigenetics single-cell mitochondrial
Created 2017-07-17
237 commits to master branch, last one 10 months ago
kdkorthauer
dmrseq kdkorthauer
14
54
mit
10
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
dmr inference epigenetics methylation bioconductor bisulfite-sequencing
Created 2017-07-14
290 commits to devel branch, last one about a month ago
Larrycpan
MAAS Larrycpan
2
37
gpl-3.0
2
Delineation of tumor cell subpopulations using MAAS
cancer epigenetics multi-modal single-cell
Created 2023-12-20
175 commits to main branch, last one 3 months ago
epigen
MrBiomics epigen
1
34
mit
5
MrBiomics - Modules & Recipes augment Bioinformatics for Multi-Omics Analyses at Scale
r python modules recipes science genetics genomics research framework snakemake workflows automation biomedical epigenetics data-science bioinformatics next-generation-sequencing
Created 2022-03-28
85 commits to main branch, last one 4 days ago