5 results found Sort:

YuLab-SMU
ChIPseeker YuLab-SMU
75
228
unknown
20
:dart: ChIP peak Annotation, Comparison and Visualization
atac-seq chip-seq annotation comparison epigenetics epigenomics visualization
Created 2014-05-31
927 commits to devel branch, last one 24 days ago
nf-core
methylseq nf-core
146
141
mit
150
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
pbat rrbs em-seq nf-core nextflow pipeline workflow epigenome methyl-seq epigenomics dna-methylation bisulfite-sequencing
Created 2018-03-12
1,513 commits to master branch, last one 27 days ago
quadbio
Pando quadbio
21
111
mit
5
Multiome GRN inference.
epigenomics single-cell transcriptomics
Created 2021-06-08
354 commits to main branch, last one 7 months ago
Novartis
peax Novartis
14
68
other
5
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
autoencoder epigenomics deep-learning pattern-search sequential-data data-visualization interactive-machine-learning
Created 2018-09-27
838 commits to develop branch, last one 4 years ago
dohlee
metheor dohlee
8
43
gpl-3.0
3
:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
rust epigenomics bioinformatics dna-methylation computational-biology computational-epigenomics
Created 2021-09-23
123 commits to master branch, last one about a year ago