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88

389

unknown

20

Customizable workflows based on snakemake and python for the analysis of NGS data

ngs hi-c rna-seq atac-seq chip-seq workflow snakemake bisulfite-sequencing

Created 2016-03-23

4,059 commits to master branch, last one about a month ago

146

143

mit

151

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

pbat rrbs em-seq nf-core nextflow pipeline workflow epigenome methyl-seq epigenomics dna-methylation bisulfite-sequencing

Created 2018-03-12

1,513 commits to master branch, last one about a month ago

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65

bsd-3-clause

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Arioc: GPU-accelerated DNA short-read alignment

gpu cuda genomics c-plusplus methylation read-aligners bioinformatics variant-analysis sequence-alignment bisulfite-sequencing dna-sequence-alignment

Created 2014-12-08

192 commits to master branch, last one 2 months ago

14

54

mit

10

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

dmr inference epigenetics methylation bioconductor bisulfite-sequencing

Created 2017-07-14

290 commits to devel branch, last one 2 months ago