Statistics for topic bioinformatics

List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))

Official code repository for GATK versions 4 and up

Earl Grey: A fully automated TE curation and annotation pipeline

Feature-rich Python implementation of the tximport package for gene count estimation.

multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))

Earl Grey: A fully automated TE curation and annotation pipeline

A program for assessing the T2T genome continuity

Rapid standardisation and quality control of GWAS or QTL summary statistics

List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))

A curated list of awesome Bioinformatics libraries and software.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Similarity networks of biosynthetic gene clusters

ScienceAgentBench: Toward Rigorous Assessment of Language Agents for Data-Driven Scientific Discovery

multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))

A program for assessing the T2T genome continuity

Feature-rich Python implementation of the tximport package for gene count estimation.

List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

Making Protein folding accessible to all!

A curated list of awesome Bioinformatics libraries and software.

Official git repository for Biopython (originally converted from CVS)

Genome size estimation from long read overlaps

Feature-rich Python implementation of the tximport package for gene count estimation.

Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

Unsupervised Deep Disentangled Representation of Single-Cell Omics

A bioinformatics tool written in Rust to find palindromic sequences in DNA

Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

R inside Python

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

What should perfect bioinformatic tools be like?

List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Official git repository for Biopython (originally converted from CVS)

A curated list of awesome Bioinformatics libraries and software.

R inside Python

Multiple Protein Structure Alignment at Scale with FoldMason

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

modular & open DIA search

What should perfect bioinformatic tools be like?