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Official git repository for Biopython (originally converted from CVS)
Created
2009-03-15
15,965 commits to master branch, last one 4 days ago
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCB...
Created
2010-11-13
3,965 commits to ete4 branch, last one 11 days ago
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Created
2016-11-29
962 commits to master branch, last one 18 days ago
RAxML Next Generation: faster, easier-to-use and more flexible
Created
2016-12-08
488 commits to master branch, last one 7 months ago
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Created
2017-10-10
102 commits to master branch, last one about a year ago
Bayesian Evolutionary Analysis by Sampling Trees
Created
2014-01-15
3,037 commits to master branch, last one about a month ago
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Created
2016-04-06
1,618 commits to develop branch, last one 10 months ago
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Created
2016-04-07
1,463 commits to master branch, last one 4 months ago
HyPhy: Hypothesis testing using Phylogenies
Created
2011-08-31
3,847 commits to master branch, last one 2 days ago
Phylogenetic analysis in R
Created
2014-05-25
2,615 commits to master branch, last one 3 days ago
Bayesian Evolutionary Analysis Sampling Trees
Created
2015-04-19
13,580 commits to master branch, last one 12 days ago
Efficient phylogenomic software by maximum likelihood
This repository has been archived
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Created
2015-11-06
3,699 commits to master branch, last one 4 years ago
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Created
2014-09-15
1,989 commits to master branch, last one 2 months ago
Population-scale genomics
Created
2018-02-08
2,831 commits to main branch, last one 9 days ago
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Created
2015-01-15
1,989 commits to master branch, last one 3 years ago
Ultrafast Sample Placement on Existing Trees
Created
2020-09-16
2,007 commits to master branch, last one 29 days ago
Version 5 of the CAFE phylogenetics software
Created
2018-09-06
615 commits to master branch, last one about a month ago
Comparative Genomics Toolkit 3
Created
2019-09-13
10,156 commits to develop branch, last one 2 days ago
phylogenetics tools for linux (and other mostly posix compliant) computers
Created
2013-02-14
1,496 commits to master branch, last one 2 months ago
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Created
2016-08-30
359 commits to master branch, last one 3 years ago
SplitsTree App
Created
2021-10-07
974 commits to main branch, last one 2 days ago
A tool for exploring large trees in the browser
Created
2021-06-24
2,387 commits to master branch, last one about a month ago
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
Created
2016-04-22
140 commits to master branch, last one 2 months ago
Massively parallel phylogenetic placement of genetic sequences
Created
2015-11-03
821 commits to master branch, last one 2 years ago
Pandas DataFrames for phylogenetics
Created
2017-10-24
118 commits to master branch, last one 5 years ago
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Created
2022-03-24
83 commits to main branch, last one 5 months ago
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Created
2020-04-11
291 commits to master branch, last one 15 days ago
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Created
2020-05-12
430 commits to master branch, last one 15 days ago
A library for working with phylogenetic and population genetic data.
Created
2014-10-24
4,028 commits to master branch, last one 3 days ago
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Created
2019-11-14
36 commits to master branch, last one 2 months ago