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Official git repository for Biopython (originally converted from CVS)
Created
2009-03-15
15,817 commits to master branch, last one 22 hours ago
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCB...
Created
2010-11-13
3,949 commits to ete4 branch, last one 4 days ago
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Created
2016-11-29
961 commits to master branch, last one 15 days ago
RAxML Next Generation: faster, easier-to-use and more flexible
Created
2016-12-08
488 commits to master branch, last one about a month ago
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Created
2017-10-10
102 commits to master branch, last one 11 months ago
Bayesian Evolutionary Analysis by Sampling Trees
Created
2014-01-15
3,023 commits to master branch, last one 8 days ago
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Created
2016-04-06
1,618 commits to develop branch, last one 3 months ago
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Created
2016-04-07
1,457 commits to master branch, last one 2 months ago
HyPhy: Hypothesis testing using Phylogenies
Created
2011-08-31
3,817 commits to master branch, last one about a month ago
Phylogenetic analysis in R
Created
2014-05-25
2,475 commits to master branch, last one 5 days ago
Efficient phylogenomic software by maximum likelihood
This repository has been archived
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Created
2015-11-06
3,699 commits to master branch, last one 3 years ago
Bayesian Evolutionary Analysis Sampling Trees
Created
2015-04-19
13,264 commits to master branch, last one 20 hours ago
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
Created
2014-09-15
1,965 commits to master branch, last one 4 days ago
Population-scale genomics
Created
2018-02-08
2,708 commits to main branch, last one 17 days ago
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Created
2015-01-15
1,989 commits to master branch, last one 2 years ago
Ultrafast Sample Placement on Existing Trees
Created
2020-09-16
1,977 commits to master branch, last one 10 days ago
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Created
2016-08-30
359 commits to master branch, last one 3 years ago
phylogenetics tools for linux (and other mostly posix compliant) computers
Created
2013-02-14
1,477 commits to master branch, last one 2 months ago
Version 5 of the CAFE phylogenetics software
Created
2018-09-06
614 commits to master branch, last one about a year ago
Comparative Genomics Toolkit 3
Created
2019-09-13
8,880 commits to develop branch, last one 3 days ago
A tool for exploring very large trees in the browser
Created
2021-06-24
2,347 commits to master branch, last one 28 days ago
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
Created
2016-04-22
139 commits to master branch, last one 10 months ago
Pandas DataFrames for phylogenetics
Created
2017-10-24
118 commits to master branch, last one 4 years ago
Massively parallel phylogenetic placement of genetic sequences
Created
2015-11-03
821 commits to master branch, last one about a year ago
A toolkit for analyzing and visualizing phylogenetic (placement) data
Created
2017-10-20
439 commits to master branch, last one 3 months ago
A library for working with phylogenetic and population genetic data.
Created
2014-10-24
3,790 commits to master branch, last one 24 hours ago
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Created
2022-03-24
72 commits to main branch, last one 6 months ago
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Created
2020-04-11
290 commits to master branch, last one about a month ago
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Created
2020-05-12
363 commits to master branch, last one 24 days ago
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Created
2020-08-10
20 commits to master branch, last one 3 years ago