Search Results - RepositoryStats

47

252

mit

11

A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

chemistry reactions cheminformatics materials-design materials-science molecular-modeling materials-screening molecular-evolution molecular-structures computational-science materials-discoveries computational-chemistry

Created 2018-03-18

5,306 commits to master branch, last one about a month ago

phyx FePhyFoFum

17

113

gpl-3.0

11

phylogenetics tools for linux (and other mostly posix compliant) computers

simulation phylogenetics molecular-evolution

Created 2013-02-14

1,496 commits to master branch, last one about a month ago

SNPGenie chasewnelson

37

109

gpl-3.0

10

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

vcf dnds perl evolution vcf-files nucleotide snp-report nei-gojobori dnds-estimation fasta-sequences natural-selection sequence-analysis substitution-rate molecular-evolution population-genetics nucleotide-diversity diversity-measurement evolutionary-parameters next-generation-sequencing

Created 2015-05-24

236 commits to master branch, last one about a year ago

cogent3 cogent3

54

102

bsd-3-clause

11

Comparative Genomics Toolkit 3

python biology genomics parallel pycogent biopython evolution statistics data-science markov-chain phylogenetics bioinformatics non-stationary signal-processing maximum-likelihood phylogenetic-trees sequence-alignment molecular-evolution biological-sequence-analysis

Created 2019-09-13

9,985 commits to develop branch, last one 16 hours ago

CafePlotter moshi4

3

26

mit

3

A tool for plotting CAFE5 gene family expansion/contraction result

python evolution matplotlib phylogenetics phylogenomics bioinformatics phylogenetic-trees molecular-evolution

Created 2023-03-03

16 commits to main branch, last one about a year ago