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Toolkit for processing sequences in FASTA/Q formats
Created
2012-03-23
133 commits to master branch, last one 8 months ago
A comprehensive library for computational molecular biology
Created
2017-07-30
4,918 commits to main branch, last one 3 days ago
BWK awk modified for biological data
Created
2012-01-06
51 commits to master branch, last one 7 years ago
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Created
2016-04-04
6,948 commits to main branch, last one 10 days ago
Fast alignment and preprocessing of chromatin profiles
Created
2019-10-25
494 commits to master branch, last one 5 months ago
Fast multi-line FASTA/Q reader in several programming languages
Created
2011-08-31
27 commits to master branch, last one 5 years ago
A fast multiple sequence alignment program.
Created
2019-04-18
401 commits to main branch, last one about a year ago
Cython bindings and Python interface to HMMER3.
Created
2020-10-30
1,343 commits to master branch, last one about a month ago
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Created
2022-11-13
63 commits to main branch, last one 4 months ago
A Python package for CD-HIT, clustering protein or nucleotide sequences.
Created
2023-05-25
24 commits to main branch, last one 5 months ago
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Created
2015-05-24
236 commits to master branch, last one about a year ago
Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.
Created
2016-07-14
799 commits to main branch, last one a day ago
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and...
Created
2020-10-22
86 commits to main branch, last one about a year ago
Physicochemical properties, indices and descriptors for amino-acid sequences.
Created
2021-10-20
120 commits to main branch, last one 14 days ago
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Created
2018-02-26
214 commits to master branch, last one 4 years ago
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teac...
Created
2020-06-10
32 commits to master branch, last one 5 months ago
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Created
2017-03-17
729 commits to master branch, last one 5 months ago
Sequence alignment tools
Created
2017-06-15
180 commits to master branch, last one 8 months ago
🧬 Toolkit for generating various numerical features of protein sequences
Created
2012-11-18
335 commits to master branch, last one 7 months ago
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Created
2023-04-30
521 commits to main branch, last one about a month ago
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
Created
2021-01-26
86 commits to master branch, last one 2 years ago