9 results found Sort:

lucidrains
enformer-pytorch lucidrains
86
465
mit
16
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
genomics transformer deep-learning dna-sequences gene-expression attention-mechanism artificial-intelligence
Created 2021-10-23
178 commits to main branch, last one 5 months ago
nickpoison
astsa nickpoison
46
125
gpl-3.0
11
R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R
r astsa package data-science em-algorithm missing-data data-analysis dna-sequences kalman-filter state-space-models time-series-analysis
Created 2016-11-25
1,802 commits to master branch, last one 23 hours ago
helicalAI
helical helicalAI
11
104
agpl-3.0
4
This repository contains the python package for Helical
uce vcf data evo-2 scgpt rnaseq biology rna-seq geneformer transformer pre-training deep-learning dna-sequences bioinformatics gene-expression neural-networks foundation-models pre-trained-model artificial-intelligence
Created 2024-04-27
1,096 commits to release branch, last one 15 days ago
Griffan
VerifyBamID Griffan
15
96
unknown
7
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
bam cram genetics qc-analysis biostatistics contamination dna-sequences bioinformatics next-generation-sequencing
Created 2016-02-15
203 commits to master branch, last one 10 months ago
OpenHero
gblastn OpenHero
21
65
mit
6
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
dna gpu cuda blastn nvidia ncbi-blast dna-alignment dna-sequences bioinformatics high-performance high-performance-computing
Created 2013-08-27
89 commits to master branch, last one 2 years ago
BioJulia
BioAlignments.jl BioJulia
24
62
mit
14
Sequence alignment tools
biology biojulia bam-files sam-files dna-sequences bioinformatics sequence-analysis sequence-alignment smith-waterman-alignment high-throughput-sequencing
Created 2017-06-15
180 commits to master branch, last one 7 months ago
muellan
metacache muellan
12
57
gpl-3.0
7
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
fasta fastq genome refseq taxonomy long-reads metagenomes ncbi-refseq metagenomics read-mapping dna-sequences bioinformatics classification metagenomic-data short-read-mapper bioinformatics-tool metagenomic-analysis genomic-data-analysis bioinformatics-algorithms metagenomic-classification
Created 2017-02-07
1,031 commits to master branch, last one about a month ago
smortezah
smashpp smortezah
13
55
gpl-3.0
2
Find and visualize rearrangements in DNA sequences
dna-sequences alignment-free data-visualization genome-compression genome-rearrangment high-throughput-sequencing
Created 2018-02-02
2,108 commits to master branch, last one 11 months ago
JinsenLi
deepDNAshape JinsenLi
2
29
bsd-3-clause
7
A method to predict DNA shape features considering farther flanking region.
dna dna-sequences dna-structures
Created 2023-02-08
33 commits to main branch, last one 5 months ago