9 results found Sort:

lucidrains
enformer-pytorch lucidrains
84
443
mit
17
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
genomics transformer deep-learning dna-sequences gene-expression attention-mechanism artificial-intelligence
Created 2021-10-23
178 commits to main branch, last one 2 months ago
asntech
intervene asntech
28
136
other
6
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
pyton bedtools heatmaps intersection venn-diagram dna-sequences visualization genome-analysis
Created 2017-01-14
209 commits to master branch, last one about a year ago
nickpoison
astsa nickpoison
46
123
gpl-3.0
12
R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R
r astsa package data-science em-algorithm missing-data data-analysis dna-sequences kalman-filter state-space-models time-series-analysis
Created 2016-11-25
1,761 commits to master branch, last one 3 days ago
Griffan
VerifyBamID Griffan
15
94
unknown
8
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
bam cram genetics qc-analysis biostatistics contamination dna-sequences bioinformatics next-generation-sequencing
Created 2016-02-15
203 commits to master branch, last one 7 months ago
helicalAI
helical helicalAI
7
71
agpl-3.0
3
This repository contains the python package for Helical
vcf data rnaseq biology rna-seq transformer pre-training deep-learning dna-sequences bioinformatics gene-expression neural-networks foundation-models pre-trained-model artificial-intelligence
Created 2024-04-27
992 commits to release branch, last one 11 days ago
OpenHero
gblastn OpenHero
20
64
mit
7
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
dna gpu cuda blastn nvidia ncbi-blast dna-alignment dna-sequences bioinformatics high-performance high-performance-computing
Created 2013-08-27
89 commits to master branch, last one 2 years ago
BioJulia
BioAlignments.jl BioJulia
24
61
mit
15
Sequence alignment tools
biology biojulia bam-files sam-files dna-sequences bioinformatics sequence-analysis sequence-alignment smith-waterman-alignment high-throughput-sequencing
Created 2017-06-15
180 commits to master branch, last one 4 months ago
muellan
metacache muellan
11
57
gpl-3.0
7
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
fasta fastq genome refseq taxonomy long-reads metagenomes ncbi-refseq metagenomics read-mapping dna-sequences bioinformatics classification metagenomic-data short-read-mapper bioinformatics-tool metagenomic-analysis genomic-data-analysis bioinformatics-algorithms metagenomic-classification
Created 2017-02-07
1,029 commits to master branch, last one 3 months ago
smortezah
smashpp smortezah
13
55
gpl-3.0
2
Find and visualize rearrangements in DNA sequences
dna-sequences alignment-free data-visualization genome-compression genome-rearrangment high-throughput-sequencing
Created 2018-02-02
2,108 commits to master branch, last one 8 months ago