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FOI-Bioinformatics
flextaxd FOI-Bioinformatics
8
65
gpl-3.0
3
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
16s gtdb ganon kraken2 amplicon centrifuge krakenuniq ncbi-database ncbi-taxonomy custom-database custom-taxonomy taxonomic-classification taxonomic-classifications metagenomic-classification
Created 2019-06-20
215 commits to master branch, last one about a year ago
muellan
metacache muellan
11
57
gpl-3.0
7
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
fasta fastq genome refseq taxonomy long-reads metagenomes ncbi-refseq metagenomics read-mapping dna-sequences bioinformatics classification metagenomic-data short-read-mapper bioinformatics-tool metagenomic-analysis genomic-data-analysis bioinformatics-algorithms metagenomic-classification
Created 2017-02-07
1,029 commits to master branch, last one about a month ago
taxprofiler
taxpasta taxprofiler
7
34
apache-2.0
4
TAXnomic Profile Aggregation and STAndardisation
python profiling metagenomics bioinformatics classification standardisation taxonomic-profiling taxonomic-classifications metagenomic-classification
Created 2022-06-03
602 commits to dev branch, last one 29 days ago