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A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Created
2016-02-28
813 commits to master branch, last one 10 days ago
A Go package for engineering organisms.
Created
2020-05-29
490 commits to main branch, last one 18 days ago
Versatile open-source tool for microbiome analysis
Created
2014-05-16
3,277 commits to master branch, last one a day ago
Renderers and renderer extensions for JupyterLab
Created
2017-06-08
629 commits to main branch, last one 3 months ago
SeqAn's official repository.
Created
2012-10-25
8,340 commits to main branch, last one about a month ago
Efficient pythonic random access to fasta subsequences
Created
2013-09-12
875 commits to master branch, last one about a month ago
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Created
2016-04-04
6,737 commits to main branch, last one 8 days ago
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Created
2017-10-10
102 commits to master branch, last one about a year ago
A Java API for high-throughput sequencing data (HTS) formats.
Created
2014-04-29
2,842 commits to master branch, last one 10 days ago
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Created
2019-03-19
606 commits to master branch, last one 3 months ago
Syntax highlighting for computational biology
Created
2017-12-05
188 commits to master branch, last one 3 years ago
Randomly subsample sequencing reads or alignments
Created
2019-09-26
240 commits to main branch, last one 16 days ago
A collection of scripts and notes related to genomics and bioinformatics
Created
2015-12-22
117 commits to master branch, last one about a month ago
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Created
2015-02-04
1,736 commits to master branch, last one 5 months ago
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Created
2019-12-15
3,260 commits to master branch, last one 4 days ago
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Created
2015-04-07
582 commits to master branch, last one 9 months ago
A robust and fast clustering method for amplicon-based studies
Created
2012-11-10
2,935 commits to master branch, last one 5 months ago
:rocket: seqfu - Sequece Fastx Utilities
Created
2020-11-26
590 commits to main branch, last one 14 hours ago
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Created
2015-11-26
586 commits to master branch, last one about a month ago
Software for prediction of plasmid sequences in metagenomic assemblies
Created
2017-01-12
89 commits to master branch, last one 3 years ago
A DNA Sequence Alignment/Map (SAM) library for Clojure
Created
2014-01-08
1,621 commits to master branch, last one 28 days ago
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
Created
2016-08-24
645 commits to master branch, last one 10 days ago
FASTA and FASTQ parsing in Rust
Created
2017-07-31
123 commits to main branch, last one about a year ago
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinfo...
Created
2016-03-02
533 commits to python-master branch, last one 3 years ago
Parse and process FASTA and FASTQ formatted files of biological sequences.
Created
2018-10-05
124 commits to master branch, last one 2 months ago
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Created
2017-02-07
1,028 commits to master branch, last one 6 months ago
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Created
2018-12-11
226 commits to master branch, last one 2 years ago
VAPiD: Viral Annotation and Identification Pipeline
Created
2016-12-15
355 commits to master branch, last one 3 years ago
Frequently used commands in bioinformatics
Created
2021-03-26
952 commits to main branch, last one 3 months ago
Generate unique KMERs for every contig in a FASTA file
Created
2020-04-24
43 commits to master branch, last one 2 years ago