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williamfiset
DEPRECATED-data-structures williamfiset
1.3k
2.9k
mit
144
A collection of powerful data structures
heap java trie graph queue stack fenwick unionfind binarytree hash-table linkedlist suffixtree union-find segmenttree suffixarray disjoint-set segment-tree balanced-tree priority-queue data-structures
Created 2016-06-19
650 commits to master branch, last one 2 years ago
seqan
seqan seqan
171
485
other
42
SeqAn's official repository.
bwt simd blast cpp14 fasta seqan htslib sam-bam indexing alignment suffixarray fastq-format bioinfomatics high-performance sequence-alignments
Created 2012-10-25
8,371 commits to main branch, last one 2 days ago
IlyaGrebnov
libsais IlyaGrebnov
24
187
apache-2.0
15
libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
bwt lcp saca sais lcp-array divsufsort suffixarray suffix-array longest-common-prefix parallel-suffix-array burrows-wheeler-transform
Created 2021-02-23
41 commits to master branch, last one about a month ago
emmanuel-marty
lz4ultra emmanuel-marty
5
57
other
9
Optimal LZ4 compressor, that produces files that decompress faster while keeping the best compression ratio
c lz4 compression suffixarray optimization
Created 2019-04-08
65 commits to master branch, last one about a year ago
IlyaGrebnov
libcubwt IlyaGrebnov
1
32
apache-2.0
5
libcubwt is a library for GPU accelerated suffix array and burrows wheeler transform construction.
bwt gpu cuda saca suffixarray suffix-array burrows-wheeler-transform
Created 2023-02-12
4 commits to main branch, last one 10 months ago