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DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Created
2020-06-11
66 commits to master branch, last one about a year ago
Quickly search, compare, and analyze genomic and metagenomic data sets.
Created
2016-04-09
2,159 commits to latest branch, last one 6 days ago
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Created
2018-08-07
200 commits to master branch, last one 4 months ago
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
Created
2020-10-30
522 commits to main branch, last one about a year ago
modular k-mer count matrix and Bloom filter construction for large read collections
Created
2020-07-08
496 commits to master branch, last one 5 months ago
A versatile toolkit for k-mers with taxonomic information
Created
2018-08-09
423 commits to master branch, last one 7 months ago
To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
Created
2021-08-25
121 commits to master branch, last one 2 days ago
Generate unique KMERs for every contig in a FASTA file
Created
2020-04-24
43 commits to master branch, last one 2 years ago
Fast and space-efficient taxonomic classification of long reads
Created
2022-01-05
106 commits to main branch, last one 26 days ago