5 results found Sort:

pirovc
genome_updater pirovc
15
146
mit
1
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
bash ncbi genome refseq genbank genomes database download genomics sequence bioinformatics
Created 2017-05-11
164 commits to master branch, last one 10 months ago
oschwengers
referenceseeker oschwengers
5
89
gpl-3.0
6
Rapid determination of appropriate reference genomes.
ani wgs mash refseq microbiology bioinformatics reference-genomes
Created 2018-11-01
219 commits to main branch, last one 10 months ago
pirovc
ganon pirovc
13
87
mit
4
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...
gtdb ncbi k-mer refseq genbank taxonomy microbiome minimizers bloom-filter metagenomics bioinformatics
Created 2018-08-30
690 commits to master branch, last one 9 months ago
muellan
metacache muellan
11
57
gpl-3.0
7
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
fasta fastq genome refseq taxonomy long-reads metagenomes ncbi-refseq metagenomics read-mapping dna-sequences bioinformatics classification metagenomic-data short-read-mapper bioinformatics-tool metagenomic-analysis genomic-data-analysis bioinformatics-algorithms metagenomic-classification
Created 2017-02-07
1,029 commits to master branch, last one about a month ago
JensUweUlrich
Taxor JensUweUlrich
2
43
bsd-3-clause
2
Fast and space-efficient taxonomic classification of long reads
kmer bioinf refseq syncmer taxonomy long-read microbiome xor-filter em-algorithm metagenomics bioinformatics pseudo-alignment taxonomic-profiling long-read-sequencing interleaved-xor-filter taxonomic-classification
Created 2022-01-05
103 commits to main branch, last one 21 days ago