5 results found Sort:

philres
ngmlr philres
40
288
mit
22
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing
Created 2016-09-01
668 commits to master branch, last one 3 years ago
marbl
SALSA marbl
47
176
mit
20
SALSA: A tool to scaffold long read assemblies with Hi-C data
hic assembly scaffold long-read
Created 2016-06-06
113 commits to master branch, last one 4 months ago
kcleal
dysgu kcleal
11
92
mit
3
Toolkit for calling structural variants using short or long reads
variant genomics long-read paired-end structural bioinformatics variant-calling structural-variation
Created 2019-10-30
520 commits to master branch, last one 8 days ago
mortazavilab
swan_vis mortazavilab
11
54
mit
4
A Python library to visualize and analyze long-read transcriptomes
pacbio long-read transcriptome bioinformatics pacbio-iso-seq oxford-nanopore
Created 2019-11-19
541 commits to master branch, last one 6 months ago
JensUweUlrich
Taxor JensUweUlrich
2
41
bsd-3-clause
2
Fast and space-efficient taxonomic classification of long reads
kmer bioinf refseq syncmer taxonomy long-read microbiome xor-filter em-algorithm metagenomics bioinformatics pseudo-alignment taxonomic-profiling long-read-sequencing interleaved-xor-filter taxonomic-classification
Created 2022-01-05
102 commits to main branch, last one about a month ago