Search Results - RepositoryStats

40

295

mit

22

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing

Created 2016-09-01

668 commits to master branch, last one 3 years ago

SALSA marbl

47

183

mit

20

SALSA: A tool to scaffold long read assemblies with Hi-C data

hic assembly scaffold long-read

Created 2016-06-06

113 commits to master branch, last one 8 months ago

dysgu kcleal

12

100

mit

3

Toolkit for calling structural variants using short or long reads

variant genomics long-read paired-end structural bioinformatics variant-calling structural-variation

Created 2019-10-30

581 commits to master branch, last one 3 days ago

swan_vis mortazavilab

11

58

mit

4

A Python library to visualize and analyze long-read transcriptomes

pacbio long-read transcriptome bioinformatics pacbio-iso-seq oxford-nanopore

Created 2019-11-19

541 commits to master branch, last one 10 months ago

Taxor JensUweUlrich

2

43

bsd-3-clause

2

Fast and space-efficient taxonomic classification of long reads

kmer bioinf refseq syncmer taxonomy long-read microbiome xor-filter em-algorithm metagenomics bioinformatics pseudo-alignment taxonomic-profiling long-read-sequencing interleaved-xor-filter taxonomic-classification

Created 2022-01-05

103 commits to main branch, last one 3 months ago