6 results found Sort:

fritzsedlazeck
Sniffles fritzsedlazeck
95
566
other
26
Structural variation caller using third generation sequencing
ngm-lr pacbio bioconda nanopore bioinformatics structural-variation structural-variations
Created 2015-10-25
403 commits to master branch, last one 5 days ago
Illumina
manta Illumina
153
416
gpl-3.0
41
Structural variant and indel caller for mapped sequencing data
indels bioinformatics structural-variation structural-variations
This repository has been archived (exclude archived)
Created 2013-05-30
2,631 commits to master branch, last one 5 years ago
fritzsedlazeck
SURVIVOR fritzsedlazeck
46
362
mit
12
Toolset for SV simulation, comparison and filtering
vcf bioconda survivor simulator comparison bioinformatics structural-variations
Created 2015-10-27
180 commits to master branch, last one about a year ago
philres
ngmlr philres
40
294
mit
22
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing
Created 2016-09-01
668 commits to master branch, last one 3 years ago
walaj
svaba walaj
45
238
gpl-3.0
17
Structural variation and indel detection by local assembly
indels variants c-plus-plus assembled-contigs structural-variations
Created 2016-09-15
450 commits to master branch, last one about a month ago
starskyzheng
panpop starskyzheng
9
100
mit
2
Application of pan-genome for population
vcf panpop genomics clustering bioinformatics population-genetics structural-variations
Created 2022-04-26
268 commits to main branch, last one 2 months ago