6 results found Sort:

fritzsedlazeck
Sniffles fritzsedlazeck
86
525
other
27
Structural variation caller using third generation sequencing
ngm-lr pacbio bioconda nanopore bioinformatics structural-variation structural-variations
Created 2015-10-25
262 commits to master branch, last one about a month ago
Illumina
manta Illumina
151
390
gpl-3.0
40
Structural variant and indel caller for mapped sequencing data
indels bioinformatics structural-variation structural-variations
This repository has been archived (exclude archived)
Created 2013-05-30
2,631 commits to master branch, last one 4 years ago
fritzsedlazeck
SURVIVOR fritzsedlazeck
46
334
mit
12
Toolset for SV simulation, comparison and filtering
vcf bioconda survivor simulator comparison bioinformatics structural-variations
Created 2015-10-27
180 commits to master branch, last one 7 months ago
philres
ngmlr philres
41
284
mit
22
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing
Created 2016-09-01
668 commits to master branch, last one 2 years ago
walaj
svaba walaj
44
227
gpl-3.0
17
Structural variation and indel detection by local assembly
indels variants c-plus-plus assembled-contigs structural-variations
Created 2016-09-15
448 commits to master branch, last one about a month ago
starskyzheng
panpop starskyzheng
7
77
mit
2
Application of pan-genome for population
vcf panpop genomics clustering bioinformatics population-genetics structural-variations
Created 2022-04-26
264 commits to main branch, last one 16 days ago