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Cloud-native genomic dataframes and batch computing
Created
2015-10-27
11,505 commits to main branch, last one 5 days ago
C library for high-throughput sequencing data formats
Created
2012-05-15
3,261 commits to develop branch, last one 6 days ago
This vCard PHP library can easily parse or generate/export vCards as .vcf
Created
2013-08-26
284 commits to master branch, last one 7 months ago
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Created
2014-05-15
419 commits to master branch, last one 7 months ago
Haplotype VCF comparison tools
Created
2015-04-28
583 commits to master branch, last one 2 years ago
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Created
2013-11-22
361 commits to main branch, last one 13 days ago
cython + htslib == fast VCF and BCF processing
Created
2015-08-12
516 commits to main branch, last one 18 days ago
annotate a VCF with other VCFs/BEDs/tabixed files
Created
2015-04-29
374 commits to master branch, last one 6 months ago
Toolset for SV simulation, comparison and filtering
Created
2015-10-27
180 commits to master branch, last one 6 months ago
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created
2014-09-26
532 commits to bloody branch, last one 4 years ago
Structural variant toolkit for VCFs
Created
2018-04-13
1,297 commits to develop branch, last one 24 days ago
A Java API for high-throughput sequencing data (HTS) formats.
Created
2014-04-29
2,838 commits to master branch, last one 8 days ago
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Created
2017-10-10
102 commits to master branch, last one 11 months ago
Syntax highlighting for computational biology
Created
2017-12-05
188 commits to master branch, last one 2 years ago
Personal Cancer Genome Reporter (PCGR)
Created
2017-03-20
858 commits to master branch, last one about a year ago
A collection of scripts and notes related to genomics and bioinformatics
Created
2015-12-22
115 commits to master branch, last one about a year ago
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Created
2019-12-15
3,248 commits to master branch, last one 15 days ago
Graph realignment tools for structural variants
Created
2017-11-24
33 commits to master branch, last one about a year ago
Genome browser and variant annotation
Created
2022-07-07
727 commits to master branch, last one 3 months ago
machine learning for genomic variants
Created
2017-01-22
577 commits to master branch, last one about a month ago
Learning the Variant Call Format
Created
2015-06-05
172 commits to main branch, last one 2 months ago
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
Created
2015-07-17
324 commits to master branch, last one 3 years ago
Bayesian genotyper for structural variants
Created
2014-08-14
561 commits to master branch, last one 4 years ago
VCF-kit: Assorted utilities for the variant call format
Created
2014-07-16
642 commits to master branch, last one 9 months ago
A not so forgiving vCard / vcf parser
Created
2013-12-19
177 commits to master branch, last one 3 months ago
A standalone and free application to explore genetics variations from VCF file
Created
2018-11-02
3,448 commits to master branch, last one about a year ago
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Created
2015-05-24
236 commits to master branch, last one 9 months ago
tools for reading, writing, merging, and remapping SNPs
Created
2019-06-09
1,133 commits to master branch, last one about a month ago
A DNA Sequence Alignment/Map (SAM) library for Clojure
Created
2014-01-08
1,591 commits to master branch, last one 21 days ago
Python 3 library with good support for both reading and writing VCF
Created
2016-09-15
246 commits to main branch, last one 5 months ago