49 results found Sort:

246
982
mit
55
Cloud-native genomic dataframes and batch computing
Created 2015-10-27
11,600 commits to main branch, last one 5 days ago
447
812
other
62
C library for high-throughput sequencing data formats
Created 2012-05-15
3,325 commits to develop branch, last one 6 days ago
This vCard PHP library can easily parse or generate/export vCards as .vcf
Created 2013-08-26
284 commits to master branch, last one about a year ago
115
474
gpl-2.0
30
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Created 2014-05-15
421 commits to master branch, last one 3 months ago
124
416
other
41
Haplotype VCF comparison tools
Created 2015-04-28
583 commits to master branch, last one 2 years ago
72
378
mit
7
cython + htslib == fast VCF and BCF processing
Created 2015-08-12
528 commits to main branch, last one about a month ago
216
373
other
79
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Created 2013-11-22
361 commits to main branch, last one 5 months ago
56
365
mit
26
annotate a VCF with other VCFs/BEDs/tabixed files
Created 2015-04-29
374 commits to master branch, last one 11 months ago
Toolset for SV simulation, comparison and filtering
Created 2015-10-27
180 commits to master branch, last one 11 months ago
Structural variant toolkit for VCFs
Created 2018-04-13
1,343 commits to develop branch, last one 13 days ago
50
311
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Created 2017-10-10
102 commits to master branch, last one about a year ago
244
285
unknown
50
A Java API for high-throughput sequencing data (HTS) formats.
Created 2014-04-29
2,848 commits to master branch, last one 8 days ago
7
279
mit
6
Genome browser and variant annotation
Created 2022-07-07
934 commits to master branch, last one 5 days ago
30
253
gpl-3.0
17
Syntax highlighting for computational biology
Created 2017-12-05
188 commits to master branch, last one 3 years ago
54
200
unknown
7
A collection of scripts and notes related to genomics and bioinformatics
Created 2015-12-22
117 commits to master branch, last one 2 months ago
12
157
other
1
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Created 2019-12-15
3,261 commits to master branch, last one 24 days ago
28
150
other
19
Graph realignment tools for structural variants
Created 2017-11-24
33 commits to master branch, last one about a year ago
45
140
other
18
machine learning for genomic variants
Created 2017-01-22
579 commits to master branch, last one 2 months ago
Learning the Variant Call Format
Created 2015-06-05
172 commits to main branch, last one 7 months ago
39
134
mit
7
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
Created 2015-07-17
324 commits to master branch, last one 3 years ago
55
126
mit
10
Bayesian genotyper for structural variants
Created 2014-08-14
561 commits to master branch, last one 5 years ago
VCF-kit: Assorted utilities for the variant call format
Created 2014-07-16
654 commits to master branch, last one 3 months ago
37
108
gpl-3.0
10
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Created 2015-05-24
236 commits to master branch, last one about a year ago
A not so forgiving vCard / vcf parser
Created 2013-12-19
177 commits to master branch, last one 8 months ago
21
103
gpl-3.0
16
A standalone and free application to explore genetics variations from VCF file
Created 2018-11-02
3,448 commits to master branch, last one about a year ago
19
100
bsd-3-clause
4
tools for reading, writing, merging, and remapping SNPs
Created 2019-06-09
1,163 commits to master branch, last one 2 months ago
Python 3 library with good support for both reading and writing VCF
Created 2016-09-15
246 commits to main branch, last one 10 months ago
Application of pan-genome for population
Created 2022-04-26
268 commits to main branch, last one 20 days ago