8 results found Sort:

samtools
htslib samtools
443
815
other
62
C library for high-throughput sequencing data formats
bam bcf ngs sam vcf cram htslib bioinformatics
Created 2012-05-15
3,330 commits to develop branch, last one 12 days ago
samtools
htsjdk samtools
245
285
unknown
50
A Java API for high-throughput sequencing data (HTS) formats.
bam dna ngs sam vcf cram java fasta genomics java-api sequencing
Created 2014-04-29
2,853 commits to master branch, last one 4 days ago
divonlan
genozip divonlan
12
161
other
1
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
bam bwa gvf sam vcf cram gzip bgzip fasta fastq 23andme genomics samtools compression
Created 2019-12-15
3,265 commits to master branch, last one 15 days ago
Griffan
VerifyBamID Griffan
15
94
unknown
8
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
bam cram genetics qc-analysis biostatistics contamination dna-sequences bioinformatics
Created 2016-02-15
203 commits to master branch, last one 7 months ago
chrovis
cljam chrovis
12
90
apache-2.0
11
A DNA Sequence Alignment/Map (SAM) library for Clojure
bam bcf bed gff sam vcf wig 2bit cram fasta fastq bigwig clojure genomics bioinformatics
Created 2014-01-08
1,635 commits to master branch, last one 26 days ago
sbslee
fuc sbslee
5
52
mit
2
Frequently used commands in bioinformatics
api bam bed cli gff gtf maf sam vcf cram fasta fastq visualization bioinformatics
Created 2021-03-26
952 commits to main branch, last one 6 months ago
gregzanch
cram gregzanch
5
45
mit
5
cram is a computational room acoustics module to simulate and explore various acoustic properties of a modeled space
cram fdtd webapp acoustics raytracer simulation ray-tracing room-acoustics image-source-model room-impulse-response computational-acoustics
Created 2020-01-26
275 commits to master branch, last one 2 years ago
ncherric
Iliad ncherric
2
28
mit
1
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
vcf cram idat fastq genetics genomics workflow automatic snakemake genomics-data bioinformatics modularization
Created 2023-02-20
153 commits to main branch, last one about a year ago