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Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
Created
2015-11-09
455 commits to master branch, last one 7 months ago
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Created
2017-04-04
78 commits to master branch, last one 3 years ago
A Contamination-free Multi-task Language Understanding Benchmark
Created
2024-12-02
36 commits to main branch, last one 2 months ago
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Created
2016-02-15
203 commits to master branch, last one 10 months ago
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Created
2017-08-01
334 commits to master branch, last one 8 days ago
The LM Contamination Index is a manually created database of contamination evidences for LMs.
Created
2023-05-25
91 commits to main branch, last one 11 months ago
Detecting contamination in NGS data and multi-species analysis
Created
2018-08-06
86 commits to master branch, last one 6 months ago
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...
Created
2023-01-20
46 commits to main branch, last one 4 months ago
Remove human reads from a sequencing run
Created
2023-11-21
67 commits to main branch, last one 5 months ago
A Nextflow pipeline for evaluating assembly quality
Created
2022-12-22
642 commits to main branch, last one 3 months ago