9 results found Sort:

DRL
blobtools DRL
44
195
gpl-3.0
9
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
blobtools contamination visualisation genome-assembly quality-control
Created 2015-11-09
455 commits to master branch, last one 4 months ago
benjjneb
decontam benjjneb
25
150
unknown
12
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
amplicon microbiome metagenomics contamination metabarcoding bioinformatics
Created 2017-04-04
78 commits to master branch, last one 3 years ago
Griffan
VerifyBamID Griffan
15
94
unknown
8
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
bam cram genetics qc-analysis biostatistics contamination dna-sequences bioinformatics next-generation-sequencing
Created 2016-02-15
203 commits to master branch, last one 7 months ago
khyox
recentrifuge khyox
7
86
other
6
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
ngs lmat clark kraken nanopore centrifuge robustness low-biomass metagenomics contamination comparative-genomics
Created 2017-08-01
329 commits to master branch, last one 3 months ago
hitz-zentroa
lm-contamination hitz-zentroa
4
76
unknown
5
The LM Contamination Index is a manually created database of contamination evidences for LMs.
lm llm chatgpt contamination language-model large-language-models
Created 2023-05-25
91 commits to main branch, last one 8 months ago
microsoft
MMLU-CF microsoft
2
76
mit
3
A Contamination-free Multi-task Language Understanding Benchmark
llm mmlu benchmark contamination
Created 2024-12-02
30 commits to main branch, last one 2 days ago
StevenWingett
FastQ-Screen StevenWingett
17
67
gpl-3.0
5
Detecting contamination in NGS data and multi-species analysis
bwa ngs fastq bowtie bowtie2 detection metagenomics contamination
Created 2018-08-06
86 commits to master branch, last one 3 months ago
CMU-SAFARI
RawHash CMU-SAFARI
5
50
gpl-3.0
8
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...
rawhash seeding nanopore raw-signal hash-tables read-mapping segmentation contamination nanopore-data bioinformatics nanopore-reads event-detection genome-analysis nanopore-minion nanopore-sequencing relative-abundances nanopore-analysis-pipeline raw-nanopore-signal-analysis
Created 2023-01-20
46 commits to main branch, last one 2 months ago
mbhall88
nohuman mbhall88
3
34
mit
1
Remove human reads from a sequencing run
fastq contamination bioinformatics human-read-removal human-contamination contamination-removal
Created 2023-11-21
67 commits to main branch, last one 3 months ago