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23

227

mit

10

WebAssembly modules for genomics

jq awk sed grep seqtk bowtie2 bedtools genomics minimap2 samtools javascript webassembly bioinformatics

Created 2019-09-07

1,193 commits to main branch, last one 17 days ago

28

109

other

8

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

tools public bowtie2 biobakery kneaddata quality-control

Created 2020-04-07

591 commits to master branch, last one 15 days ago

16

67

gpl-3.0

5

Detecting contamination in NGS data and multi-species analysis

bwa ngs fastq bowtie bowtie2 detection metagenomics contamination

Created 2018-08-06

86 commits to master branch, last one 3 months ago

11

40

mit

3

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

fastp gatk4 fastqc picard bowtie2 bwa-mem varscan bcftools cutadapt gatk-cnv samtools freebayes trimgalore trimmomatic gatk-bestpractices gatk4-haplotypecaller gatk-joint-variant-calling-workflow

Created 2023-12-22

69 commits to main branch, last one 11 months ago