4 results found Sort:

biowasm
biowasm biowasm
23
232
mit
10
WebAssembly modules for genomics
jq awk sed grep seqtk bowtie2 bedtools genomics minimap2 samtools javascript webassembly bioinformatics
Created 2019-09-07
1,193 commits to main branch, last one 2 months ago
biobakery
kneaddata biobakery
29
113
other
8
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
tools public bowtie2 biobakery kneaddata quality-control
Created 2020-04-07
592 commits to master branch, last one 26 days ago
StevenWingett
FastQ-Screen StevenWingett
17
68
gpl-3.0
5
Detecting contamination in NGS data and multi-species analysis
bwa ngs fastq bowtie bowtie2 detection metagenomics contamination
Created 2018-08-06
86 commits to master branch, last one 4 months ago
digo4
Clinical-Genomics digo4
11
39
mit
3
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
fastp gatk4 fastqc picard bowtie2 bwa-mem varscan bcftools cutadapt gatk-cnv samtools freebayes trimgalore trimmomatic gatk-bestpractices gatk4-haplotypecaller gatk-joint-variant-calling-workflow
Created 2023-12-22
69 commits to main branch, last one about a year ago