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Versatile open-source tool for microbiome analysis
Created
2014-05-16
3,291 commits to master branch, last one a day ago
Accurate sample inference from amplicon data with single nucleotide resolution
Created
2014-12-17
798 commits to master branch, last one 18 days ago
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Created
2017-04-04
78 commits to master branch, last one 3 years ago
Assembly and intrahost/low-frequency variant calling for viral samples
Created
2020-03-30
2,788 commits to master branch, last one about a year ago
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Created
2017-08-08
169 commits to master branch, last one about a year ago
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Created
2019-06-20
215 commits to master branch, last one about a year ago
Reference-based consensus creation
Created
2020-06-09
1,296 commits to master branch, last one 2 days ago
In-silico PCR, primer design and padlock design for in-situ sequencing
Created
2019-01-14
172 commits to main branch, last one about a month ago