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46

110

unknown

12

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

16s-rrna amplicon microbiota metagenomics microbiome-data amplicon-sequencing microbiome-analysis microbial-communities

Created 2017-08-08

169 commits to master branch, last one about a year ago

12

108

mit

2

Make Picrust2 Output Analysis and Visualization Easier

16s-rrna picrust2 tax4fun2 microbiome microbiota metagenomics visualization functional-data metagenomic-analysis

Created 2022-12-17

276 commits to main branch, last one 12 days ago

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gpl-3.0

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R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

r rstats microbiome microbiota microbiome-analysis

Created 2020-10-25

877 commits to main branch, last one about a month ago

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94

apache-2.0

5

Python package to study microbial communities using metabolic modeling.

flux cobra python cobrapy modeling community microbiome microbiota biochemistry hacktoberfest systems-biology metabolic-models

Created 2017-02-14

809 commits to main branch, last one about a month ago