3 results found Sort:

nf-core
ampliseq nf-core
117
187
mit
151
Amplicon sequencing analysis workflow using DADA2 and QIIME2
16s 18s its edna rrna pacbio qiime2 nf-core illumina nextflow pipeline workflow iontorrent microbiome metagenomics metabarcoding amplicon-sequencing taxonomic-profiling taxonomic-classification
Created 2018-09-26
2,541 commits to master branch, last one 6 days ago
FOI-Bioinformatics
flextaxd FOI-Bioinformatics
8
65
gpl-3.0
3
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
16s gtdb ganon kraken2 amplicon centrifuge krakenuniq ncbi-database ncbi-taxonomy custom-database custom-taxonomy taxonomic-classification taxonomic-classifications metagenomic-classification
Created 2019-06-20
215 commits to master branch, last one about a year ago
Russel88
DAtest Russel88
9
50
gpl-3.0
8
Compare different differential abundance and expression methods
16s auc otu rnaseq microbiome proteomics metabolomics metagenomics compare-methods relative-abundances marker-gene-analysis false-positive-control differential-expression differential-abundance-methods
Created 2017-06-23
214 commits to master branch, last one 2 years ago