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A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Created
2022-11-22
290 commits to main branch, last one 16 days ago
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
Created
2020-02-06
331 commits to master branch, last one 4 months ago
Differential expression analysis for single-cell RNA-seq data.
Created
2018-07-02
478 commits to master branch, last one about a year ago
Brings bulk and pseudobulk transcriptomics to the tidyverse
Created
2019-08-28
1,458 commits to master branch, last one about a month ago
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
Created
2021-02-16
130 commits to main branch, last one 18 days ago
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Created
2020-05-07
989 commits to master branch, last one about a month ago
Porting DESeq2 into python via rpy2
Created
2018-03-24
170 commits to master branch, last one about a year ago
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Created
2018-12-12
140 commits to main branch, last one 2 days ago
R package for pathway analysis in scRNA-seq data
Created
2021-11-16
449 commits to main branch, last one about a month ago
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Created
2022-10-12
1,105 commits to master branch, last one about a month ago
Experimental design framework for scRNAseq population studies (eQTL and DE)
Created
2020-03-24
111 commits to master branch, last one 6 months ago