owkin / PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Date Created 2022-11-22 (2 years ago)

Commits 331 (last one 8 days ago)

Stargazers 606 (4 this week)

Watchers 11 (0 this week)

Forks 69

License mit

Ranking

RepositoryStats indexes 597,394 repositories, of these owkin/PyDESeq2 is ranked #79,249 (87th percentile) for total stargazers, and #192,581 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #12,821/119,856.

owkin/PyDESeq2 is also tagged with popular topics, for these it's ranked: python (#4,162/22362), bioinformatics (#60/816)

Other Information

owkin/PyDESeq2 has 6 open pull requests on Github, 196 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 33 open issues and 105 closed issues.

There have been 25 releases, the latest one was published on 2024-10-25 (2 months ago) with the name v0.4.12.

Homepage URL: https://pydeseq2.readthedocs.io/en/stable/

All Topics

python rna-seq bioinformatics transcriptomics differential-expression

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331 commits on the default branch (main) since jan '22

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updated: 2024-12-24 @ 11:51pm, id: 569371342 / R_kgDOIe_qzg