owkin / PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Date Created 2022-11-22 (2 years ago)

Commits 324 (last one a day ago)

Stargazers 590 (2 this week)

Watchers 11 (0 this week)

Forks 64

License mit

Ranking

RepositoryStats indexes 585,332 repositories, of these owkin/PyDESeq2 is ranked #80,160 (86th percentile) for total stargazers, and #191,187 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #12,922/116,570.

owkin/PyDESeq2 is also tagged with popular topics, for these it's ranked: python (#4,187/22032), bioinformatics (#63/791)

Other Information

owkin/PyDESeq2 has 4 open pull requests on Github, 189 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 35 open issues and 100 closed issues.

There have been 24 releases, the latest one was published on 2024-10-25 (29 days ago) with the name v0.4.12.

Homepage URL: https://pydeseq2.readthedocs.io/en/latest/

All Topics

python rna-seq bioinformatics transcriptomics differential-expression

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324 commits on the default branch (main) since jan '22

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updated: 2024-11-23 @ 09:54am, id: 569371342 / R_kgDOIe_qzg