owkin / PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Date Created 2022-11-22 (about a year ago)

Commits 290 (last one 16 days ago)

Stargazers 541 (2 this week)

Watchers 10 (0 this week)

Forks 59

License mit

Ranking

RepositoryStats indexes 534,551 repositories, of these owkin/PyDESeq2 is ranked #80,947 (85th percentile) for total stargazers, and #199,760 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #12,812/103,470.

owkin/PyDESeq2 is also tagged with popular topics, for these it's ranked: python (#4,207/20447), bioinformatics (#63/726)

Other Information

owkin/PyDESeq2 has 7 open pull requests on Github, 162 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 32 open issues and 85 closed issues.

There have been 20 releases, the latest one was published on 2024-04-25 (2 months ago) with the name v0.4.9.

Homepage URL: https://pydeseq2.readthedocs.io/en/latest/

All Topics

python rna-seq bioinformatics transcriptomics differential-expression

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290 commits on the default branch (main) since jan '22

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updated: 2024-06-28 @ 03:45am, id: 569371342 / R_kgDOIe_qzg