5 results found Sort:

rezakj
iCellR rezakj
19
121
unknown
13
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...
3d umap icellr dropout cite-seq scrna-seq scvdj-seq clustering imputation pseudotime 10xgenomics normalization diffusion-maps intractive-graph batch-normalization clustering-algorithm singel-cell-sequencing cell-type-classification
Created 2018-12-11
84 commits to master branch, last one 4 months ago
parashardhapola
scarf parashardhapola
12
98
bsd-3-clause
5
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
tsne umap big-data cite-seq genomics scrna-seq clustering multiomics pseudotime scatac-seq gene-modules bioinformatics graph-analytics memory-efficient dimension-reduction single-cell-rna-seq single-cell-atac-seq single-cell-genomics scalable-data-analysis differential-expression
Created 2020-05-07
1,018 commits to master branch, last one 28 days ago
alexisvdb
singleCellHaystack alexisvdb
9
79
other
5
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
r cite-seq pseudotime scatac-seq single-cell bioinformatics transcriptomics spatial-proteomics spatial-transcriptomics
Created 2019-02-13
446 commits to master branch, last one 10 months ago
LiQian-XC
sctour LiQian-XC
4
52
mit
3
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
pseudotime latent-space vector-field deep-learning single-cell-genomics inference-and-prediction
Created 2022-01-03
94 commits to main branch, last one about a year ago
LouisFaure
scFates LouisFaure
2
50
bsd-3-clause
2
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
scrnaseq elpigraph pseudotime tree-inference
Created 2020-06-29
561 commits to master branch, last one 20 days ago