6 results found Sort:

theislab
scarches theislab
50
320
bsd-3-clause
13
Reference mapping for single-cell genomics
scrna-seq multiomics single-cell deep-learning batch-correction data-integration human-cell-atlas rna-seq-analysis single-cell-genomics multimodal-deep-learning
Created 2019-08-12
1,175 commits to master branch, last one 24 days ago
parashardhapola
scarf parashardhapola
12
90
bsd-3-clause
5
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
tsne umap big-data cite-seq genomics scrna-seq clustering multiomics pseudotime scatac-seq gene-modules bioinformatics graph-analytics memory-efficient dimension-reduction single-cell-rna-seq single-cell-atac-seq single-cell-genomics scalable-data-analysis differential-expression
Created 2020-05-07
989 commits to master branch, last one about a month ago
bigbio
proteomics-sample-metadata bigbio
106
75
gpl-2.0
21
The Proteomics Experimental Design file format: Standard for experimental design annotation
sdrf mage-tab metadata multiomics proteomics msrun-metadata pride-metadata proteomexchange sdrf-proteomics proteomics-datasets proteomics-community proteomics-experiments
Created 2018-06-12
2,154 commits to master branch, last one 7 months ago
abdenlab
oxbow abdenlab
6
50
apache-2.0
7
Read specialized NGS formats as data frames in R, Python, and more.
r ngs pandas polars python genomics dataframe fair-data rust-lang multiomics apache-arrow data-science bioinformatics
Created 2023-05-16
105 commits to main branch, last one 3 months ago
pinellolab
pyrovelocity pinellolab
5
37
agpl-3.0
7
𝒫robabilistic modeling of RNA velocity ⬱
pyro multiomics rna-splicing rna-velocity transcriptomics single-cell-rna-seq probabilistic-models single-cell-genomics deep-generative-model rna-splicing-analysis single-cell-multiomics cell-fate-determination rna-velocity-estimation probabilistic-programming developmental-trajectories
Created 2022-09-07
231 commits to main branch, last one 9 months ago
CostaLab
scMEGA CostaLab
2
32
other
6
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
grn multiomics single-cell
Created 2022-04-27
258 commits to main branch, last one 8 months ago