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velocyto.R velocyto-team

230

186

unknown

16

RNA velocity estimation in R

rna-velocity-estimation

Created 2017-10-10

56 commits to master branch, last one 5 years ago

velocyto.py velocyto-team

86

165

bsd-2-clause

12

RNA velocity estimation in Python

rna-seq single-cell rna-velocity-estimation

Created 2017-10-17

303 commits to master branch, last one 6 years ago

kb_python pachterlab

24

160

bsd-2-clause

11

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

bustools kallisto kb-python scrna-seq single-cell-rna-seq rna-velocity-estimation

Created 2019-10-14

610 commits to master branch, last one 5 days ago

cellDancer GuangyuWangLab2021

10

66

bsd-3-clause

0

Predict RNA velocity through deep learning

cell-fate rna-splicing rna-velocity transcriptomics single-cell-rna-seq single-cell-genomics rna-splicing-analysis rna-velocity-estimation

Created 2023-01-23

583 commits to main branch, last one about a year ago

pyrovelocity pinellolab

5

47

agpl-3.0

6

𝒫robabilistic modeling of RNA velocity ⬱

pyro multiomics rna-splicing rna-velocity transcriptomics single-cell-rna-seq probabilistic-models single-cell-genomics deep-generative-model rna-splicing-analysis single-cell-multiomics cell-fate-determination rna-velocity-estimation probabilistic-programming developmental-trajectories

Created 2022-09-07

2,453 commits to main branch, last one 3 days ago

regvelo theislab

1

35

bsd-3-clause

2

inferring regulatory cellular dynamics

grn-inference generative-model single-cell-dynamics perturbation-analysis rna-velocity-estimation

Created 2023-02-16

105 commits to main branch, last one a day ago