6 results found Sort:

aristoteleo
dynamo-release aristoteleo
59
431
bsd-3-clause
10
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
dynamo nasc-seq sci-fate scnt-seq cell-fate scrna-seq scslam-seq rna-jacobian rna-velocity vector-field rna-curvature rna-divergence rna-acceleration dynamical-systems potential-landscape differential-geometry
Created 2019-07-05
4,170 commits to master branch, last one a day ago
theislab
cellrank theislab
47
355
bsd-3-clause
8
CellRank: dynamics from multi-view single-cell data
genetics data-science rna-velocity markov-chains bioinformatics machine-learning manifold-learning single-cell-rna-seq single-cell-genomics cell-fate-transitions trajectory-generation cell-fate-determination fuzzy-clustering-analyses
Created 2020-03-12
2,288 commits to main branch, last one 16 days ago
basilkhuder
Seurat-to-RNA-Velocity basilkhuder
26
133
unknown
6
A guide to using a Seurat object in conjunction with RNA Velocity
scvelo seurat anndata bustools kallisto velocyto kb-python rna-velocity integrating-loom kallisto-bustools
Created 2020-01-08
99 commits to master branch, last one 3 years ago
GuangyuWangLab2021
cellDancer GuangyuWangLab2021
10
65
bsd-3-clause
0
Predict RNA velocity through deep learning
cell-fate rna-splicing rna-velocity transcriptomics single-cell-rna-seq single-cell-genomics rna-splicing-analysis rna-velocity-estimation
Created 2023-01-23
583 commits to main branch, last one about a year ago
kevinrue
velociraptor kevinrue
10
55
other
6
Toolkit for Single-Cell Velocity
rna-velocity
Created 2020-06-04
117 commits to devel branch, last one 2 months ago
pinellolab
pyrovelocity pinellolab
5
46
agpl-3.0
8
𝒫robabilistic modeling of RNA velocity ⬱
pyro multiomics rna-splicing rna-velocity transcriptomics single-cell-rna-seq probabilistic-models single-cell-genomics deep-generative-model rna-splicing-analysis single-cell-multiomics cell-fate-determination rna-velocity-estimation probabilistic-programming developmental-trajectories
Created 2022-09-07
1,947 commits to main branch, last one 4 months ago