6 results found Sort:

aristoteleo
dynamo-release aristoteleo
58
405
bsd-3-clause
10
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
dynamo nasc-seq sci-fate scnt-seq cell-fate scrna-seq scslam-seq rna-jacobian rna-velocity vector-field rna-curvature rna-divergence rna-acceleration dynamical-systems potential-landscape differential-geometry
Created 2019-07-05
4,057 commits to master branch, last one a day ago
theislab
cellrank theislab
38
305
bsd-3-clause
8
CellRank: dynamics from multi-view single-cell data
genetics data-science rna-velocity markov-chains bioinformatics machine-learning manifold-learning single-cell-rna-seq single-cell-genomics cell-fate-transitions trajectory-generation cell-fate-determination fuzzy-clustering-analyses
Created 2020-03-12
2,276 commits to main branch, last one about a month ago
basilkhuder
Seurat-to-RNA-Velocity basilkhuder
26
126
unknown
6
A guide to using a Seurat object in conjunction with RNA Velocity
scvelo seurat anndata bustools kallisto velocyto kb-python rna-velocity integrating-loom kallisto-bustools
Created 2020-01-08
99 commits to master branch, last one 2 years ago
GuangyuWangLab2021
cellDancer GuangyuWangLab2021
13
57
bsd-3-clause
0
Predict RNA velocity through deep learning
cell-fate rna-splicing rna-velocity transcriptomics single-cell-rna-seq single-cell-genomics rna-splicing-analysis rna-velocity-estimation
Created 2023-01-23
583 commits to main branch, last one 5 months ago
kevinrue
velociraptor kevinrue
9
51
other
6
Toolkit for Single-Cell Velocity
rna-velocity
Created 2020-06-04
103 commits to devel branch, last one a day ago
pinellolab
pyrovelocity pinellolab
5
35
agpl-3.0
7
𝒫robabilistic modeling of RNA velocity ⬱
pyro multiomics rna-splicing rna-velocity transcriptomics single-cell-rna-seq probabilistic-models single-cell-genomics deep-generative-model rna-splicing-analysis single-cell-multiomics cell-fate-determination rna-velocity-estimation probabilistic-programming developmental-trajectories
Created 2022-09-07
231 commits to main branch, last one 8 months ago