6 results found Sort:

pachterlab
kallisto pachterlab
168
631
bsd-2-clause
47
Near-optimal RNA-Seq quantification
rna-seq kallisto pseudoalignment
Created 2014-11-13
1,271 commits to master branch, last one 8 months ago
nf-core
scrnaseq nf-core
154
178
mit
130
A single-cell RNAseq pipeline for 10X genomics data
alevin nf-core rna-seq bustools kallisto nextflow pipeline workflow star-solo cellranger 10xgenomics single-cell 10x-genomics
Created 2019-04-08
1,401 commits to master branch, last one 4 days ago
pachterlab
kb_python pachterlab
23
141
bsd-2-clause
12
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
bustools kallisto kb-python scrna-seq single-cell-rna-seq rna-velocity-estimation
Created 2019-10-14
495 commits to master branch, last one 5 months ago
basilkhuder
Seurat-to-RNA-Velocity basilkhuder
26
127
unknown
6
A guide to using a Seurat object in conjunction with RNA Velocity
scvelo seurat anndata bustools kallisto velocyto kb-python rna-velocity integrating-loom kallisto-bustools
Created 2020-01-08
99 commits to master branch, last one 2 years ago
pachterlab
kallistobustools pachterlab
29
113
mit
18
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
rna-seq bustools kallisto single-cell
Created 2019-06-13
649 commits to master branch, last one 2 years ago
snakemake-workflows
rna-seq-kallisto-sleuth snakemake-workflows
43
63
mit
6
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
sleuth rna-seq kallisto snakemake sciworkflows reproducibility differential-expression
Created 2018-12-12
140 commits to main branch, last one 2 days ago