6 results found Sort:

common-workflow-language
common-workflow-language common-workflow-language
196
1.5k
apache-2.0
108
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwl science commonwl workflow workflows containers sciworkflows common-workflow-language
Created 2014-09-25
1,980 commits to main branch, last one 4 months ago
common-workflow-language
cwltool common-workflow-language
231
340
apache-2.0
43
Common Workflow Language reference implementation
cwl science commonwl workflows containers sciworkflows common-workflow-language
Created 2015-10-07
4,647 commits to main branch, last one a day ago
snakemake-workflows
rna-seq-star-deseq2 snakemake-workflows
205
331
mit
13
RNA-seq workflow using STAR and DESeq2
deseq2 snakemake sciworkflows reproducibility gene-expression-analysis
Created 2017-10-06
148 commits to master branch, last one 6 months ago
snakemake-workflows
dna-seq-gatk-variant-calling snakemake-workflows
145
244
mit
10
This Snakemake pipeline implements the GATK best-practices workflow
gatk snakemake sciworkflows reproducibility genomic-variant-calling
Created 2018-06-28
125 commits to main branch, last one 3 years ago
snakemake-workflows
dna-seq-varlociraptor snakemake-workflows
40
83
mit
9
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Var...
snakemake sciworkflows varlociraptor reproducibility genomic-variant-calling
Created 2020-01-17
432 commits to master branch, last one 5 days ago
snakemake-workflows
rna-seq-kallisto-sleuth snakemake-workflows
44
66
mit
6
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
sleuth rna-seq kallisto snakemake sciworkflows reproducibility differential-expression
Created 2018-12-12
172 commits to main branch, last one 3 days ago