16 results found Sort:

common-workflow-language
common-workflow-language common-workflow-language
196
1.5k
apache-2.0
108
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwl science commonwl workflow workflows containers sciworkflows common-workflow-language
Created 2014-09-25
1,980 commits to main branch, last one 5 months ago
DataBiosphere
toil DataBiosphere
240
907
apache-2.0
55
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
aws cwl wdl mesos slurm python pipeline workflow gridengine kubernetes common-workflow-language workflow-description-language
Created 2015-03-30
6,169 commits to master branch, last one 2 days ago
arvados
arvados arvados
119
399
other
38
An open source platform for managing and analyzing biomedical big data
go aws cwl gcp ruby azure cloud docker python arvados bigdata cluster genomics workflow bioinformatics workflow-engine
Created 2013-04-11
33,159 commits to main branch, last one 2 days ago
common-workflow-language
cwltool common-workflow-language
231
341
apache-2.0
43
Common Workflow Language reference implementation
cwl science commonwl workflows containers sciworkflows common-workflow-language
Created 2015-10-07
4,655 commits to main branch, last one 2 days ago
rabix
composer rabix
72
302
apache-2.0
23
Visual and code editor for Common Workflow Language
cwl ide editor common-workflow-language
Created 2016-08-16
3,008 commits to master branch, last one 3 years ago
Barski-lab
cwl-airflow Barski-lab
32
186
apache-2.0
7
Python package to extend Airflow functionality with CWL1.1 support
cwl dag commonwl workflow containers cwl-airflow cwl-descriptor common-workflow-language
Created 2017-09-11
669 commits to master branch, last one about a year ago
CBICA
CaPTk CBICA
65
185
other
5
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cpp cwl nci nih u24 itcr cbica cpp11 cancer cwltool nci-itcr analytics radiomics image-analysis medical-imaging machine-learning radiomics-features cancer-imaging-research medical-image-computing medical-image-processing
Created 2018-04-10
7,846 commits to master branch, last one 2 years ago
reanahub
reana reanahub
56
129
mit
18
REANA: Reusable research data analysis platform
cwl containers kubernetes research-data reusable-science reproducible-research reproducible-workflows
Created 2017-01-16
610 commits to master branch, last one a day ago
EBI-Metagenomics
emg-viral-pipeline EBI-Metagenomics
16
128
apache-2.0
7
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
cwl viruses nextflow pipeline workflow
Created 2020-04-29
301 commits to master branch, last one 5 months ago
dockstore
dockstore dockstore
28
122
apache-2.0
21
An app store for scientific workflows, tools, notebooks, and services
cwl wdl docker nextflow workflow dockstore containers bioinformatics
Created 2015-04-03
3,897 commits to develop branch, last one 5 days ago
ga4gh
workflow-execution-service-schemas ga4gh
39
82
apache-2.0
40
The WES API is a standard way to run and manage portable workflows.
cwl wdl ga4gh workflow
Created 2016-03-29
301 commits to develop branch, last one about a year ago
rabix
cwl-svg rabix
17
77
apache-2.0
10
A library for generating an interactive SVG visualization of CWL workflows
cwl svg workflow visualization bioinformatics
Created 2017-02-23
332 commits to master branch, last one 7 months ago
common-workflow-library
bio-cwl-tools common-workflow-library
37
76
apache-2.0
18
CWL CommandLineTool descriptions for biology/life-sciences related applications
cwl
Created 2019-08-06
279 commits to release branch, last one 6 months ago
4dn-dcic
tibanna 4dn-dcic
28
70
mit
14
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...
aws cwl wdl conda docker pipelines snakemake aws-lambda cwl-workflow wdl-workflow bioinformatics aws-step-function snakemake-workflow
Created 2016-07-14
4,023 commits to master branch, last one 2 months ago
rabix
benten rabix
10
67
apache-2.0
8
A language server for Common Workflow Language
cwl ide editor workflow cwl-documents language-server common-workflow-language
Created 2018-12-19
825 commits to master branch, last one 4 years ago
ResearchObject
ro-crate-py ResearchObject
30
53
apache-2.0
37
Python library for RO-Crate
cwl galaxy metadata ro-crate biohackeu20 biohackcovid20 researchobject
Created 2019-10-21
699 commits to master branch, last one about a month ago