6 results found Sort:

broadinstitute
cromwell broadinstitute
359
1.0k
bsd-3-clause
111
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
hpc wdl cloud ga4gh scala docker executor workflow containers application bioinformatics workflow-execution workflow-description-language
Created 2015-04-17
5,640 commits to develop branch, last one 10 days ago
ga4gh
benchmarking-tools ga4gh
47
193
apache-2.0
53
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
ga4gh genomics benchmarking variant-calls standardization genome-sequencing reference-materials
Created 2015-10-21
77 commits to master branch, last one 4 years ago
ohsu-comp-bio
funnel ohsu-comp-bio
33
121
mit
21
Funnel is a toolkit for distributed task execution via a simple, standard API.
ga4gh slurm docker aws-batch gridengine kubernetes pbs-torque google-cloud
Created 2017-02-03
1,429 commits to master branch, last one 2 days ago
ga4gh
workflow-execution-service-schemas ga4gh
38
82
apache-2.0
40
The WES API is a standard way to run and manage portable workflows.
cwl wdl ga4gh workflow
Created 2016-03-29
301 commits to develop branch, last one about a year ago
phenopackets
phenopacket-schema phenopackets
30
79
bsd-3-clause
12
Repository for the GA4GH phenopacket schema
ga4gh schema protobuf phenotypes phenopackets ehr-phenotyping monarchinitiative
Created 2018-03-19
845 commits to master branch, last one 5 months ago
ga4gh
vrs-python ga4gh
27
52
apache-2.0
18
GA4GH Variation Representation Python Implementation
ga4gh genomics bioinformatics
Created 2017-12-28
718 commits to main branch, last one a day ago