6 results found Sort:

broadinstitute
cromwell broadinstitute
360
1.0k
bsd-3-clause
112
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
hpc wdl cloud ga4gh scala docker executor workflow containers application bioinformatics workflow-execution workflow-description-language
Created 2015-04-17
5,678 commits to develop branch, last one 4 days ago
ga4gh
benchmarking-tools ga4gh
47
201
apache-2.0
52
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
ga4gh genomics benchmarking variant-calls standardization genome-sequencing reference-materials
Created 2015-10-21
77 commits to master branch, last one 4 years ago
ohsu-comp-bio
funnel ohsu-comp-bio
34
124
mit
20
Funnel is a toolkit for distributed task execution via a simple, standard API.
ga4gh slurm docker aws-batch gridengine kubernetes pbs-torque google-cloud
Created 2017-02-03
1,432 commits to master branch, last one 27 days ago
phenopackets
phenopacket-schema phenopackets
31
84
bsd-3-clause
11
Repository for the GA4GH phenopacket schema
ga4gh schema protobuf phenotypes phenopackets ehr-phenotyping monarchinitiative
Created 2018-03-19
845 commits to master branch, last one 8 months ago
ga4gh
workflow-execution-service-schemas ga4gh
39
83
apache-2.0
39
The WES API is a standard way to run and manage portable workflows.
cwl wdl ga4gh workflow
Created 2016-03-29
301 commits to develop branch, last one about a year ago
ga4gh
vrs-python ga4gh
30
53
apache-2.0
16
GA4GH Variation Representation Python Implementation
ga4gh genomics bioinformatics
Created 2017-12-28
751 commits to main branch, last one 4 days ago