Search Results - RepositoryStats

68

546

bsd-3-clause

17

LLM-based ontological extraction tools, including SPIRES

ai llm ner nlp gpt-3 linkml oaklib chat-gpt obofoundry data-modeling language-models monarchinitiative relation-extraction large-language-models information-extraction named-entity-recognition

Created 2023-01-03

1,435 commits to main branch, last one 15 hours ago

human-phenotype-ontology obophenotype

51

280

other

26

Ontology for the description of human clinical features

hpo obo owl ontology phenotype obofoundry ontologies phenotyping semantic-web monarchinitiative

Created 2015-08-19

8,007 commits to master branch, last one 2 days ago

mondo monarch-initiative

51

223

cc-by-4.0

10

Mondo Disease Ontology

owl mondo disease ontology obofoundry monarchinitiative disease-classification

Created 2017-09-20

11,633 commits to master branch, last one 15 hours ago

Exomiser exomiser

54

190

agpl-3.0

23

A Tool to Annotate and Prioritize Exome Variants

exome analysis genomics variants phenotypes monarchinitiative

Created 2014-11-04

3,285 commits to master branch, last one 4 months ago

biolink-model biolink

71

169

other

24

Schema and generated objects for biolink data model and upper ontology

owl rdf yaml ncats neo4j linkml biolink json-api standard datamodel obofoundry gene-ontology specification knowledge-graphs ncats-translator monarchinitiative

Created 2017-12-04

3,313 commits to master branch, last one about a month ago

cell-ontology obophenotype

48

135

cc-by-4.0

25

An ontology of cell types

owl anatomy metazoa genomics ontology cell-types obofoundry semantic-web cell-ontology transcriptomics anatomy-ontology monarchinitiative

Created 2015-06-04

3,868 commits to master branch, last one a day ago

uberon obophenotype

28

129

other

29

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

uberon anatomy metazoa ontology obofoundry geneontology gross-anatomy anatomy-ontology monarchinitiative

Created 2010-03-16

5,479 commits to master branch, last one 3 days ago

ontology-access-kit INCATools

23

108

apache-2.0

14

Ontology Access Kit: A python library and command line application for working with ontologies

owl rdf apis oaklib python ontology obofoundry geneontology ontology-api semantic-web monarchinitiative

Created 2022-03-28

594 commits to main branch, last one 8 days ago

kg-covid-19 Knowledge-Graph-Hub

26

78

bsd-3-clause

15

An instance of KG Hub to produce a knowledge graph for COVID-19 response.

monarchinitiative

Created 2020-03-19

1,683 commits to master branch, last one 11 months ago

phenopacket-schema phenopackets

28

72

bsd-3-clause

12

Repository for the GA4GH phenopacket schema

ga4gh schema protobuf phenotypes phenopackets ehr-phenotyping monarchinitiative

Created 2018-03-19

803 commits to master branch, last one a day ago

dipper monarch-initiative

26

56

bsd-3-clause

36

Data Ingestion Pipeline for Monarch

monarchinitiative

Created 2014-10-25

4,416 commits to master branch, last one 2 years ago

curate-gpt monarch-initiative

10

48

bsd-3-clause

5

LLM-driven curation assist tool (pre-alpha)

ai gpt llm ontogpt curation obofoundry ontologies biocuration ontology-tools monarchinitiative

Created 2023-05-27

78 commits to main branch, last one 10 days ago

koza monarch-initiative

3

45

bsd-3-clause

25

Data transformation framework for LinkML data models

etl koza linkml ontology obofoundry knowledge-graph monarchinitiative

Created 2020-12-17

323 commits to main branch, last one 11 days ago