Search Results - RepositoryStats

83

628

bsd-3-clause

19

LLM-based ontological extraction tools, including SPIRES

ai llm ner nlp gpt-3 linkml oaklib chat-gpt obofoundry data-modeling language-models monarchinitiative relation-extraction large-language-models information-extraction named-entity-recognition

Created 2023-01-03

1,905 commits to main branch, last one a day ago

human-phenotype-ontology obophenotype

51

295

other

27

Ontology for the description of human clinical features

hpo obo owl ontology phenotype obofoundry ontologies phenotyping semantic-web monarchinitiative

Created 2015-08-19

8,125 commits to master branch, last one 2 days ago

mondo monarch-initiative

54

237

cc-by-4.0

11

Mondo Disease Ontology

owl mondo disease ontology obofoundry monarchinitiative disease-classification

Created 2017-09-20

11,968 commits to master branch, last one a day ago

ontology-development-kit INCATools

53

231

bsd-3-clause

22

Bootstrap an OBO Library ontology

obo owl robot travis protege ontology obofoundry monarchinitiative continuous-integration

Created 2015-12-15

2,157 commits to master branch, last one 5 days ago

Exomiser exomiser

55

203

agpl-3.0

24

A Tool to Annotate and Prioritize Exome Variants

exome analysis genomics variants phenotypes monarchinitiative

Created 2014-11-04

3,314 commits to master branch, last one 11 days ago

biolink-model biolink

74

181

other

26

Schema and generated objects for biolink data model and upper ontology

owl rdf yaml ncats neo4j linkml biolink json-api standard datamodel obofoundry gene-ontology specification knowledge-graphs ncats-translator monarchinitiative

Created 2017-12-04

3,433 commits to master branch, last one about a month ago

sssom mapping-commons

24

156

bsd-3-clause

32

Simple Standard for Sharing Ontology Mappings

owl tsv sssom linkml mapping obofoundry mapping-tools mapping-commons mapping-standards metadata-elements monarchinitiative

Created 2020-04-15

366 commits to master branch, last one a day ago

cell-ontology obophenotype

49

151

cc-by-4.0

24

An ontology of cell types

owl anatomy metazoa genomics ontology cell-types obofoundry semantic-web cell-ontology transcriptomics anatomy-ontology monarchinitiative

Created 2015-06-04

4,069 commits to master branch, last one a day ago

uberon obophenotype

30

135

other

28

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

uberon anatomy metazoa ontology obofoundry geneontology gross-anatomy anatomy-ontology monarchinitiative

Created 2010-03-16

5,604 commits to master branch, last one 2 days ago

ontology-access-kit INCATools

29

127

apache-2.0

15

Ontology Access Kit: A python library and command line application for working with ontologies

owl rdf apis oaklib python ontology obofoundry geneontology ontology-api semantic-web monarchinitiative

Created 2022-03-28

617 commits to main branch, last one 2 months ago

kg-covid-19 Knowledge-Graph-Hub

26

80

bsd-3-clause

15

An instance of KG Hub to produce a knowledge graph for COVID-19 response.

monarchinitiative

Created 2020-03-19

1,683 commits to master branch, last one about a year ago

phenopacket-schema phenopackets

30

79

bsd-3-clause

12

Repository for the GA4GH phenopacket schema

ga4gh schema protobuf phenotypes phenopackets ehr-phenotyping monarchinitiative

Created 2018-03-19

845 commits to master branch, last one 5 months ago

curategpt monarch-initiative

12

71

bsd-3-clause

6

LLM-driven curation assist tool

ai gpt llm ontogpt curation obofoundry ontologies biocuration ontology-tools monarchinitiative

Created 2023-05-27

326 commits to main branch, last one 10 days ago

dipper monarch-initiative

26

57

bsd-3-clause

36

Data Ingestion Pipeline for Monarch

monarchinitiative

Created 2014-10-25

4,416 commits to master branch, last one 2 years ago

MAxO monarch-initiative

4

52

cc-by-4.0

7

Medical action ontology

owl medical medicine ontology treatment obofoundry treatments diagnostics interventions monarchinitiative

Created 2017-09-29

1,632 commits to master branch, last one 3 months ago

SEPIO-ontology monarch-initiative

11

50

unknown

28

Ontology for representing scientific evidence and provenance information

evidence obofoundry provenance monarchinitiative

Created 2016-03-10

295 commits to master branch, last one 4 months ago

koza monarch-initiative

4

49

bsd-3-clause

25

Data transformation framework for LinkML data models

etl koza linkml ontology obofoundry knowledge-graph monarchinitiative

Created 2020-12-17

341 commits to main branch, last one about a month ago