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goatools tanghaibao

209

800

bsd-2-clause

23

Python library to handle Gene Ontology (GO) terms

fdr sidak genomics holm-sidak fisher-tests goslim-terms bioinfomatics fdr-benjamini gene-ontology gene-set-enrichment

Created 2010-01-15

1,571 commits to main branch, last one 2 months ago

DeepFRI flatironinstitute

80

314

bsd-3-clause

10

Deep functional residue identification

tensorflow deep-learning gene-ontology machine-learning protein-data-bank class-activation-maps graph-convolutional-networks

Created 2019-10-24

143 commits to master branch, last one 2 years ago

go-ontology geneontology

40

226

cc-by-4.0

38

Source ontology files for the Gene Ontology

go obo owl ontology obofoundry geneontology gene-ontology functional-annotation

Created 2015-06-19

22,252 commits to master branch, last one 14 hours ago

biolink-model biolink

74

182

other

26

Schema and generated objects for biolink data model and upper ontology

owl rdf yaml ncats neo4j linkml biolink json-api standard datamodel obofoundry gene-ontology specification knowledge-graphs ncats-translator monarchinitiative

Created 2017-12-04

3,455 commits to master branch, last one 12 days ago

OntoProtein zjunlp

22

146

mit

7

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

nlp bert iclr protein pytorch iclr2022 ontoprotein pretraining gene-ontology knowledge-graph pretrained-models protein-pretraining protein-function-prediction protein-protein-interaction protein-structure-prediction

Created 2021-12-18

51 commits to main branch, last one about a year ago

ontobio biolink

31

123

bsd-3-clause

21

python library for working with ontologies and ontology associations

obo rdf graph python sparql ontology obofoundry semantic-web gene-ontology bioinformatics ontology-tools

Created 2017-04-18

1,987 commits to master branch, last one about a month ago

deepgo bio-ontology-research-group

24

81

unknown

12

Function prediction using a deep ontology-aware classifier

ontology gene-ontology machine-learning function-profiler

Created 2016-04-28

153 commits to master branch, last one 3 years ago

biomedical-knowledge-mining-book YuLab-SMU

29

73

unknown

10

:books: Biomedical knowledge mining using GOSemSim and clusterProfiler

gosemsim gene-ontology clusterprofiler disease-ontology enrichment-analysis semantic-similarity medical-subject-headings

Created 2019-01-10

39 commits to master branch, last one about a year ago

obographs geneontology

12

64

unknown

19

Basic and Advanced OBO Graphs: specification and reference implementation

owl json graphs ontology obofoundry ontologies geneontology gene-ontology ontology-standards

Created 2016-08-27

157 commits to master branch, last one about a year ago

GOSemSim YuLab-SMU

26

63

unknown

7

:golf: GO-terms Semantic Similarity Measures

gene-ontology bioinformatics semantic-similarity

Created 2014-05-31

726 commits to devel branch, last one 3 months ago