8 results found Sort:

kexinhuang12345
DeepPurpose kexinhuang12345
273
982
bsd-3-clause
31
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
ddi ppi qsar covid19 toolkit side-effects deep-learning bioinformatics drug-discovery dti-prediction drug-repurposing repurposing-drugs virtual-screening drug-drug-interaction drug-target-interaction drug-property-prediction drug-target-interactions protein-function-prediction protein-protein-interaction
Created 2020-03-19
529 commits to master branch, last one 5 months ago
zjunlp
OntoProtein zjunlp
22
145
mit
7
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
nlp bert iclr protein pytorch iclr2022 ontoprotein pretraining gene-ontology knowledge-graph pretrained-models protein-pretraining protein-function-prediction protein-protein-interaction protein-structure-prediction
Created 2021-12-18
51 commits to main branch, last one about a year ago
J-SNACKKB
FLIP J-SNACKKB
14
94
afl-3.0
7
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
protein protein-design protein-sequences representation-learning protein-fitness-prediction protein-function-prediction
Created 2021-05-13
178 commits to main branch, last one 3 months ago
westlake-repl
SaprotHub westlake-repl
7
69
mit
4
SaprotHub: Making Protein Modeling Accessible to All Biologists
nlp saprot saprothub protein-design protein-fitness universal-model foundation-models protein-structure protein-language-model protein-function-prediction protein-protein-interaction
Created 2024-05-02
440 commits to main branch, last one 5 days ago
PedroMTQ
mantis PedroMTQ
6
53
mit
3
A package to annotate protein sequences
hmmer mantis bioinformatics protein-annotation protein-function-prediction
Created 2020-06-02
257 commits to master branch, last one 11 months ago
bioinf-mcb
Metagenomic-DeepFRI bioinf-mcb
6
32
gpl-3.0
5
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
mmseqs genomics protein-sequences protein-structure protein-function-prediction
Created 2022-01-12
650 commits to main branch, last one 5 months ago
XinshaoAmosWang
DeepCriticalLearning XinshaoAmosWang
4
31
other
2
Deep Critical Learning. Implementation of ProSelfLC, IMAE, DM, etc.
pytorch deep-learning protein-design bert-transformer protein-transformer image-classification protein-localization protein-classification protein-function-prediction convolutional-neural-networks
Created 2022-08-06
30 commits to master branch, last one about a year ago
idrblab
AnnoPRO idrblab
7
30
mit
0
Feature map and function annotation of Proteins
blastp feature-map deep-learning protein-function-prediction
Created 2022-06-07
120 commits to main branch, last one 5 months ago