Search Results - RepositoryStats

268

932

bsd-3-clause

31

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

ddi ppi qsar covid19 toolkit side-effects deep-learning bioinformatics drug-discovery dti-prediction drug-repurposing repurposing-drugs virtual-screening drug-drug-interaction drug-target-interaction drug-property-prediction drug-target-interactions protein-function-prediction protein-protein-interaction

Created 2020-03-19

529 commits to master branch, last one 19 days ago

OntoProtein zjunlp

22

137

mit

7

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

nlp bert iclr protein pytorch iclr2022 ontoprotein pretraining gene-ontology knowledge-graph pretrained-models protein-pretraining protein-function-prediction protein-protein-interaction protein-structure-prediction

Created 2021-12-18

51 commits to main branch, last one about a year ago

FLIP J-SNACKKB

12

86

afl-3.0

7

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

protein protein-design protein-sequences representation-learning protein-fitness-prediction protein-function-prediction

Created 2021-05-13

164 commits to main branch, last one about a year ago

mantis PedroMTQ

6

52

mit

3

A package to annotate protein sequences

hmmer mantis bioinformatics protein-annotation protein-function-prediction

Created 2020-06-02

257 commits to master branch, last one 6 months ago

DeepCriticalLearning XinshaoAmosWang

4

31

other

2

Deep Critical Learning. Implementation of ProSelfLC, IMAE, DM, etc.

pytorch deep-learning protein-design bert-transformer protein-transformer image-classification protein-localization protein-classification protein-function-prediction convolutional-neural-networks

Created 2022-08-06

30 commits to master branch, last one about a year ago

Metagenomic-DeepFRI bioinf-mcb

6

30

gpl-3.0

5

Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

mmseqs genomics protein-sequences protein-structure protein-function-prediction

Created 2022-01-12

650 commits to main branch, last one a day ago