9 results found Sort:

westlake-repl
SaProt westlake-repl
23
267
mit
6
Saprot: Protein Language Model with Structural Alphabet
protein foldseek alphafold2 pretraining protein-llm structure-aware protein-sequence protein-structure structural-alphbet predicted-structures protein-language-model representation-learning
Created 2023-10-02
101 commits to main branch, last one 4 days ago
THUDM
ProteinLM THUDM
18
108
apache-2.0
11
Protein Language Model
deep-learning pretrained-models transfer-learning protein-language-model
Created 2021-04-23
53 commits to main branch, last one about a year ago
ISYSLAB-HUST
ProtFlash ISYSLAB-HUST
2
95
mit
2
ProtFlash: A lightweight protein language model
bioinformatics protein-sequence pretrained-models protein-embeddings protein-language-model protein-representation-learning
Created 2022-09-22
17 commits to main branch, last one 3 months ago
elttaes
Revisiting-PLMs elttaes
10
56
mit
2
Exploring Evolution-aware & free protein language models as protein function predictors
esm1b pytorch alphafold benchmark stability alphafold2 msa-transformer msa-construction metal-ion-binding contact-prediction fitness-prediction protein-annotation function-prediction zero-shot-prediction protein-classification protein-language-model remote-homology-detection multiple-sequence-alignment
Created 2022-10-06
31 commits to main branch, last one about a year ago
zaixizhang
PocketGen zaixizhang
6
55
mit
1
Implementation of PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets
generative protein-structure protein-language-model geometric-deep-learning protein-ligand-interactions
Created 2023-11-08
83 commits to main branch, last one about a month ago
NREL
EvoProtGrad NREL
6
43
bsd-3-clause
8
Directed evolution of proteins in sequence space with gradients
mcmc huggingface directed-evolution protein-engineering protein-language-model
Created 2023-06-12
22 commits to main branch, last one 15 days ago
OpenProteinAI
PoET OpenProteinAI
2
41
mit
3
Inference code for PoET: A generative model of protein families as sequences-of-sequences
proteins deep-learning generative-model protein-sequences protein-engineering protein-language-model
Created 2023-10-28
8 commits to main branch, last one 2 months ago
labstructbioinf
pLM-BLAST labstructbioinf
3
36
mit
4
Detection of remote homology by comparison of protein language model representations
bioinformatics computional-biology protein-language-model protein-sequence-embeddings
Created 2022-09-27
374 commits to main branch, last one 18 days ago
oxpig
CaLM oxpig
5
28
bsd-3-clause
1
Protein language model trained on coding DNA
dna llms codons deep-learning language-models machine-learning computational-biology protein-language-model
Created 2023-01-12
7 commits to main branch, last one 3 months ago