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List of papers about Proteins Design using Deep Learning
Created 2021-11-25
308 commits to main branch, last one 8 days ago
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Created 2020-11-21
864 commits to dev branch, last one about a month ago
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Created 2019-05-24
595 commits to master branch, last one 5 months ago
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
Created 2024-09-04
91 commits to main branch, last one 23 days ago
Official repository for the ProteinGym benchmarks
Created 2022-12-15
93 commits to main branch, last one 2 months ago
17
247
bsd-3-clause
8
Versatile computational pipeline for processing protein structure data for deep learning applications.
Created 2023-02-15
1,309 commits to main branch, last one 11 months ago
The Rosetta Bio-macromolecule modeling package.
Created 2023-11-17
11,693 commits to main branch, last one 27 days ago
19
173
apache-2.0
6
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
Created 2022-12-07
16 commits to main branch, last one 8 months ago
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158
apache-2.0
9
Fitness landscape exploration sandbox for biological sequence design.
Created 2019-12-02
505 commits to master branch, last one 2 years ago
Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
Created 2022-12-02
12 commits to main branch, last one 2 years ago
8
108
apache-2.0
4
Open source biolab
Created 2023-05-27
805 commits to master branch, last one about a month ago
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95
afl-3.0
7
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Created 2021-05-13
178 commits to main branch, last one 4 months ago
RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Marks Lab at Harvard.
Created 2022-05-06
24 commits to master branch, last one about a year ago
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
Created 2023-10-28
57 commits to master branch, last one 20 days ago
SaprotHub: Making Protein Modeling Accessible to All Biologists
Created 2024-05-02
510 commits to main branch, last one 5 days ago
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
Created 2021-02-04
22 commits to main branch, last one 3 years ago
5
73
apache-2.0
2
The first large protein language model trained follows structure instructions.
Created 2024-03-31
24 commits to main branch, last one 7 months ago
22
67
apache-2.0
4
Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
Created 2022-03-14
62 commits to main branch, last one 8 months ago
5
60
bsd-3-clause
5
Geometric deep learning of protein–DNA binding specificity
Created 2023-04-20
110 commits to main branch, last one 2 months ago
Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some additional improvements
Created 2022-12-27
2 commits to main branch, last one 2 years ago
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
Created 2020-04-08
406 commits to master branch, last one 3 years ago
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
Created 2021-11-13
348 commits to main branch, last one 4 months ago
8
51
apache-2.0
6
Official repository for discrete Walk-Jump Sampling (dWJS)
Created 2023-05-26
35 commits to main branch, last one about a year ago
A Text-guided Protein Design Framework, Nat Mach Intell 2025
Created 2023-02-05
7 commits to main branch, last one 2 days ago
Official repository for discrete Walk-Jump Sampling (dWJS)
Created 2023-08-14
11 commits to main branch, last one 7 months ago
Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
Created 2023-10-05
28 commits to main branch, last one 15 days ago
ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models
Created 2024-02-13
25 commits to main branch, last one about a month ago
10
37
unknown
2
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
Created 2024-03-23
15 commits to main branch, last one 7 months ago