12 results found Sort:

biojava
biojava biojava
385
591
lgpl-2.1
78
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
pdb java genomics bioinformatics parser-library protein-data-bank protein-sequences protein-structure sequence-alignment structure-alignment protein-modification structural-bioinformatics
Created 2013-04-03
6,856 commits to master branch, last one 21 days ago
JuliaMolSim
Molly.jl JuliaMolSim
53
389
other
18
Molecular simulation in Julia
julia lennard-jones protein-structure molecular-dynamics physics-simulation molecular-simulation structural-bioinformatics
Created 2018-05-15
1,787 commits to master branch, last one about a month ago
haddocking
pdb-tools haddocking
113
384
apache-2.0
14
A dependency-free cross-platform swiss army knife for PDB files.
pdb rcsb python protein bioinformatics structural-biology utrecht-university structural-bioinformatics
Created 2014-11-27
478 commits to master branch, last one 9 months ago
lightdock
lightdock lightdock
40
301
gpl-3.0
12
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
dna docking protein peptides chemistry proteomics bioinformatics protein-design protein-docking molecular-biology protein-structure structural-biology swarm-intelligence bioinformatics-tool molecular-structures artificial-intelligence protein-dna-interactions structural-bioinformatics glowworm-swarm-optimization protein-protein-interaction
Created 2019-09-27
488 commits to master branch, last one 8 months ago
rdk
p2rank rdk
34
241
mit
9
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
pdb java mmcif pymol groovy ligand p2rank proteins binding-sites random-forest bioinformatics drug-discovery protein-surface machine-learning protein-structure virtual-screening molecular-structures protein-ligand-docking structural-bioinformatics protein-ligand-interactions
Created 2016-09-25
1,622 commits to develop branch, last one 2 days ago
BioJulia
BioStructures.jl BioJulia
22
93
other
8
A Julia package to read, write and manipulate macromolecular structures
pdb julia biology biojulia bioinformatics protein-structure structural-biology structural-bioinformatics
Created 2017-08-16
303 commits to master branch, last one about a month ago
diegozea
MIToS.jl diegozea
18
74
other
2
A Julia package to analyze protein sequences, structures, and evolutionary information
pdb pfam sifts biology proteins coevolution conservation bioinformatics julia-language protein-evolution protein-structure mutual-information protein-sequence-analysis structural-bioinformatics multiple-sequence-alignment
Created 2015-06-18
942 commits to master branch, last one about a month ago
harryjubb
arpeggio harryjubb
23
68
gpl-3.0
8
Calculation of interatomic interactions in molecular structures
bioinformatics cheminformatics atomic-interactions structural-bioinformatics
Created 2018-05-02
169 commits to master branch, last one 3 years ago
MooersLab
pymolshortcuts MooersLab
17
67
mit
2
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functio...
pdb pml pymol aliases scripting shortcuts agile-pymol image-making pymol-plugin pymol-python figure-making startup-script agile-programming molecular-artwork molecular-graphics biomolecular-artwork efficient-programming ergonomic-keyword-use structural-bioinformatics protein-structure-analysis
Created 2018-07-22
127 commits to master branch, last one 4 months ago
carlocamilloni
Structural-Bioinformatics carlocamilloni
10
51
mit
5
This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/i...
molecular-dynamics structural-biology teaching-materials structural-bioinformatics
Created 2021-10-11
305 commits to main branch, last one 7 months ago
mitch-parker
rascore mitch-parker
56
47
apache-2.0
3
A tool for analyzing RAS protein structures
structural-bioinformatics
Created 2021-12-24
291 commits to main branch, last one 6 months ago
labstructbioinf
localpdb labstructbioinf
5
40
mit
1
Python package to manage protein structures and their annotations
bioinformatics-tool bioinformatics-databases structural-bioinformatics
Created 2020-04-22
128 commits to master branch, last one 7 months ago