14 results found Sort:

biojava
biojava biojava
395
600
lgpl-2.1
78
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
pdb java genomics bioinformatics parser-library protein-data-bank protein-sequences protein-structure sequence-alignment structure-alignment protein-modification structural-bioinformatics
Created 2013-04-03
6,907 commits to master branch, last one 25 days ago
JuliaMolSim
Molly.jl JuliaMolSim
57
420
other
19
Molecular simulation in Julia
julia lennard-jones protein-structure molecular-dynamics physics-simulation molecular-simulation structural-bioinformatics
Created 2018-05-15
1,977 commits to master branch, last one 11 hours ago
haddocking
pdb-tools haddocking
114
394
apache-2.0
14
A dependency-free cross-platform swiss army knife for PDB files.
pdb rcsb python protein bioinformatics structural-biology utrecht-university structural-bioinformatics
Created 2014-11-27
478 commits to master branch, last one about a year ago
lightdock
lightdock lightdock
44
317
gpl-3.0
13
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
dna docking protein peptides chemistry proteomics bioinformatics protein-design protein-docking molecular-biology protein-structure structural-biology swarm-intelligence bioinformatics-tool molecular-structures artificial-intelligence protein-dna-interactions structural-bioinformatics glowworm-swarm-optimization protein-protein-interaction
Created 2019-09-27
488 commits to master branch, last one about a year ago
rdk
p2rank rdk
35
264
mit
8
P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
pdb java mmcif pymol groovy ligand p2rank docking chimerax proteins binding-sites bioinformatics drug-discovery machine-learning protein-structure virtual-screening molecular-structures protein-ligand-docking structural-bioinformatics protein-ligand-interactions
Created 2016-09-25
1,711 commits to develop branch, last one 4 days ago
BioJulia
BioStructures.jl BioJulia
22
96
other
8
A Julia package to read, write and manipulate macromolecular structures
pdb julia biology biojulia bioinformatics protein-structure structural-biology structural-bioinformatics
Created 2017-08-16
309 commits to master branch, last one 2 months ago
diegozea
MIToS.jl diegozea
18
76
other
2
A Julia package to analyze protein sequences, structures, and evolutionary information
pdb pfam sifts biology proteins coevolution conservation bioinformatics julia-language protein-evolution protein-structure mutual-information protein-sequence-analysis structural-bioinformatics multiple-sequence-alignment
Created 2015-06-18
943 commits to master branch, last one 3 months ago
MooersLab
pymolshortcuts MooersLab
16
73
mit
2
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functio...
pdb pml pymol aliases scripting shortcuts agile-pymol image-making pymol-plugin pymol-python figure-making startup-script agile-programming molecular-artwork molecular-graphics biomolecular-artwork efficient-programming ergonomic-keyword-use structural-bioinformatics protein-structure-analysis
Created 2018-07-22
127 commits to master branch, last one 9 months ago
harryjubb
arpeggio harryjubb
24
70
gpl-3.0
9
Calculation of interatomic interactions in molecular structures
bioinformatics cheminformatics atomic-interactions structural-bioinformatics
Created 2018-05-02
169 commits to master branch, last one 3 years ago
carlocamilloni
Structural-Bioinformatics carlocamilloni
10
57
mit
5
This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/i...
docking molecular-dynamics structural-biology teaching-materials structure-prediction structural-bioinformatics
Created 2021-10-11
378 commits to main branch, last one about a month ago
mitch-parker
rascore mitch-parker
65
49
apache-2.0
3
A tool for analyzing RAS protein structures
structural-bioinformatics
Created 2021-12-24
291 commits to main branch, last one 10 months ago
labstructbioinf
localpdb labstructbioinf
5
41
mit
1
Python package to manage protein structures and their annotations
bioinformatics-tool bioinformatics-databases structural-bioinformatics
Created 2020-04-22
128 commits to master branch, last one 11 months ago
NoahHenrikKleinschmidt
buildamol NoahHenrikKleinschmidt
1
27
agpl-3.0
1
A fragment-based molecular assembly toolkit
molecules bioinformatics cheminformatics molecular-modeling structural-bioinformatics
Created 2023-06-12
744 commits to main branch, last one 3 months ago
Ahhmedsamehh
Bioinformatics_resources Ahhmedsamehh
4
26
mit
1
This repo is dedicated to make bioinformatics resources available for anyone who wish to enter this field. (You may find it useful or not useful based on your level). I am still embarking my path in t...
biotechnology bioinformatics machine-learning structural-biology structural-bioinformatics
Created 2023-11-27
19 commits to main branch, last one about a year ago