23 results found Sort:

652
1.3k
other
41
MDAnalysis is a Python library to analyze molecular dynamics simulations.
Created 2015-04-04
7,100 commits to develop branch, last one 9 days ago
162
512
other
42
NWChem: Open Source High-Performance Computational Chemistry
Created 2017-11-19
31,174 commits to master branch, last one a day ago
129
465
mit
30
Accurate Neural Network Potential on PyTorch
Created 2018-04-02
434 commits to master branch, last one about a year ago
Molecular simulation in Julia
Created 2018-05-15
1,902 commits to master branch, last one 2 days ago
75
272
gpl-3.0
45
Tensorflow + Molecules = TensorMol
Created 2016-10-28
1,724 commits to master branch, last one 6 years ago
MoleculeKit: Your favorite molecule manipulation kit
Created 2019-03-28
940 commits to main branch, last one 16 days ago
55
194
mit
24
WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis
Created 2014-09-29
2,022 commits to westpa2 branch, last one 12 days ago
18
190
bsd-3-clause
13
Universal extensible molecular simulation engine
Created 2015-05-25
1,007 commits to master branch, last one 9 months ago
81
173
other
21
A hierarchical, component based molecule builder
Created 2013-10-23
2,691 commits to main branch, last one 20 days ago
78
121
mit
20
A package for atom-typing as well as applying and disseminating forcefields
Created 2015-04-16
929 commits to main branch, last one a day ago
A project (and object) for storing, manipulating, and converting molecular mechanics data.
Created 2020-05-15
3,436 commits to main branch, last one 2 days ago
34
65
mit
10
A Framework for Metropolis Monte Carlo Simulation of Molecular Systems
Created 2013-01-15
3,700 commits to master branch, last one 16 days ago
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
Created 2024-01-18
11 commits to main branch, last one 8 months ago
Physical validation of molecular simulations
Created 2017-05-08
459 commits to main branch, last one 4 months ago
Neural relational inference for molecular dynamics simulations
Created 2021-01-30
28 commits to main branch, last one 2 years ago
6
51
gpl-3.0
4
Real time molecular dynamics in the browser using LAMMPS
Created 2021-04-25
250 commits to main branch, last one 4 days ago
11
42
gpl-3.0
6
Sire Molecular Simulations Framework
Created 2023-01-06
4,389 commits to devel branch, last one 21 days ago
The architector python package - for 3D metal complex design. C22085
Created 2022-11-30
127 commits to main branch, last one 8 months ago
Virtual chemistry simultaion. Particle automata. Visualization of the behavior of particles in 2D and 3D space. Artifical life research.
Created 2023-04-20
782 commits to master branch, last one 7 days ago