Statistics for topic computational-biology

RepositoryStats tracks 595,858 Github repositories, of these 89 are tagged with the computational-biology topic. The most common primary language for repositories using this topic is Python (47).

Stargazers over time for topic computational-biology

Most starred repositories for topic computational-biology (view more)

Developer-Y
cs-video-courses Developer-Y
9.2k
67.6k
unknown
1.9k
List of Computer Science courses with video lectures.
systems robotics security databases algorithms deep-learning bioinformatics computer-vision web-development computer-science database-systems embedded-systems machine-learning quantum-computing computational-biology computational-physics computer-architecture reinforcement-learning
Created 2016-10-21
385 commits to master branch, last one 3 months ago
gcorso
DiffDock gcorso
269
1.1k
mit
18
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
binding docking equivariance diffusion-models machine-learning score-based-models computational-biology non-euclidean-geometry
Created 2022-10-04
93 commits to main branch, last one 3 months ago
a-r-j
graphein a-r-j
132
1.1k
mit
18
Protein Graph Library
dgl rna python protein pytorch interactome ppi-networks deep-learning interactomics bioinformatics drug-discovery protein-design protein-data-bank protein-structure pytorch-geometric structural-biology computational-biology graph-neural-networks geometric-deep-learning gene-regulatory-networks
Created 2019-08-28
807 commits to master branch, last one about a month ago
scikit-bio
scikit-bio scikit-bio
269
897
bsd-3-clause
52
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
bioinformatics computational-biology
Created 2013-12-13
5,831 commits to main branch, last one 7 days ago
3dmol
3Dmol.js 3dmol
195
828
other
30
WebGL accelerated JavaScript molecular graphics library
molecular-graphics molecular-modeling computational-biology computational-chemistry
Created 2014-10-02
3,137 commits to master branch, last one about a month ago
opensim-org
opensim-core opensim-org
325
808
apache-2.0
58
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
science simulation engineering biomechanics computational-biology computational-science biological-simulations musculoskeletal-models
Created 2014-06-12
16,154 commits to main branch, last one 2 days ago

Trending repositories for topic computational-biology (view more)

Last 3 days (new repositories)
no newly created repositories trending in the last 3 days
Last 3 days (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,571 (+23)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,131 (+3)
mit
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

252 (+1)
mit
opencobra
opencobra/cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

474 (+1)
gpl-2.0
Last 3 days (relative gain)
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

252 (+0.4%)
mit
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,131 (+0.3%)
mit
opencobra
opencobra/cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

474 (+0.2%)
gpl-2.0
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,571 (+0.0%)
Last week (new repositories)
no newly created repositories trending in the last week
Last week (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,571 (+46)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,131 (+6)
mit
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

79 (+5)
mit
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

252 (+2)
mit
opencobra
opencobra/cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

474 (+2)
gpl-2.0
Last week (relative gain)
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

79 (+7%)
mit
oxpig
oxpig/CaLM

Protein language model trained on coding DNA

41 (+5%)
bsd-3-clause
inoue0426
inoue0426/awesome-computational-biology

Awesome list of computational biology.

76 (+3%)
cc0-1.0
earmingol
earmingol/cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

59 (+2%)
bsd-3-clause
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

252 (+0.8%)
mit
Last month (new repositories)
no newly created repositories trending in the last month
Last month (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,571 (+307)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,131 (+34)
mit
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

79 (+22)
mit
eselkin
eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

760 (+19)
cc0-1.0
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

699 (+17)
bsd-3-clause
Last month (relative gain)
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

79 (+39%)
mit
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

47 (+18%)
gpl-3.0
DrugBud-Suite
DrugBud-Suite/CADD_Vault

No description

34 (+17%)
cc-by-4.0
pengzhangzhi
pengzhangzhi/Awesome-Computational-Structural-Biology

A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.

40 (+11%)
asapdiscovery
asapdiscovery/asapdiscovery

Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium

34 (+6%)
mit
Last 12-months (new repositories)
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

108
apache-2.0
rcedgar
rcedgar/usearch12

Open-source usearch

104
gpl-3.0
lujiarui
lujiarui/Str2Str

Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)

67
mit
servierhub
servierhub/top-pharma50

Top open source software from the top 50 pharmaceutical companies

51
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

47
gpl-3.0
Last 12-months (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,571 (+4,974)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,131 (+388)
mit
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

699 (+188)
bsd-3-clause
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

252 (+158)
mit
eselkin
eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

760 (+158)
cc0-1.0
Last 12-months (relative gain)
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

79 (+1,217%)
mit
Koeng101
Koeng101/dnadesign

A Go package for designing DNA.

30 (+650%)
rcedgar
rcedgar/usearch12

Open-source usearch

104 (+512%)
gpl-3.0
QizhiPei
QizhiPei/BioT5

BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)

101 (+237%)
mit
QizhiPei
QizhiPei/FABind

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

116 (+205%)
mit