Statistics for topic computational-biology

RepositoryStats tracks 569,482 Github repositories, of these 82 are tagged with the computational-biology topic. The most common primary language for repositories using this topic is Python (44).

Stargazers over time for topic computational-biology

Most starred repositories for topic computational-biology (view more)

Developer-Y
cs-video-courses Developer-Y
9.1k
66.9k
unknown
1.9k
List of Computer Science courses with video lectures.
systems robotics security databases algorithms deep-learning bioinformatics computer-vision web-development computer-science database-systems embedded-systems machine-learning quantum-computing computational-biology computational-physics computer-architecture reinforcement-learning
Created 2016-10-21
385 commits to master branch, last one 28 days ago
gcorso
DiffDock gcorso
257
1.1k
mit
18
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
binding docking equivariance diffusion-models machine-learning score-based-models computational-biology non-euclidean-geometry
Created 2022-10-04
93 commits to main branch, last one about a month ago
a-r-j
graphein a-r-j
131
1.0k
mit
19
Protein Graph Library
dgl rna python protein pytorch interactome ppi-networks deep-learning interactomics bioinformatics drug-discovery protein-design protein-data-bank protein-structure pytorch-geometric structural-biology computational-biology graph-neural-networks geometric-deep-learning gene-regulatory-networks
Created 2019-08-28
806 commits to master branch, last one 13 days ago
scikit-bio
scikit-bio scikit-bio
268
882
bsd-3-clause
52
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
bioinformatics computational-biology
Created 2013-12-13
5,809 commits to main branch, last one 13 days ago
3dmol
3Dmol.js 3dmol
194
797
other
29
WebGL accelerated JavaScript molecular graphics library
molecular-graphics molecular-modeling computational-biology computational-chemistry
Created 2014-10-02
3,124 commits to master branch, last one 29 days ago
opensim-org
opensim-core opensim-org
318
787
apache-2.0
59
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
science simulation engineering biomechanics computational-biology computational-science biological-simulations musculoskeletal-models
Created 2014-06-12
16,077 commits to main branch, last one 2 days ago

Trending repositories for topic computational-biology (view more)

Last 3 days (new repositories)
no newly created repositories trending in the last 3 days
Last 3 days (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

66,903 (+18)
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+3)
bsd-3-clause
phonchi
phonchi/Computational-CryoEM

A curated list of awesome computational cryo-EM methods.

98 (+2)
cc0-1.0
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,063 (+2)
mit
phonchi
phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

34 (+1)
Last 3 days (relative gain)
phonchi
phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

34 (+3%)
phonchi
phonchi/Computational-CryoEM

A curated list of awesome computational cryo-EM methods.

98 (+2%)
cc0-1.0
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

90 (+1%)
apache-2.0
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+0.5%)
bsd-3-clause
MinkaiXu
MinkaiXu/GeoDiff

Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).

326 (+0.3%)
mit
Last week (new repositories)
no newly created repositories trending in the last week
Last week (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

66,903 (+253)
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+5)
bsd-3-clause
HKU-BAL
HKU-BAL/Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

238 (+3)
opensim-org
opensim-org/opensim-core

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

787 (+3)
apache-2.0
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,063 (+3)
mit
Last week (relative gain)
phonchi
phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

34 (+3%)
phonchi
phonchi/Computational-CryoEM

A curated list of awesome computational cryo-EM methods.

98 (+2%)
cc0-1.0
HKU-BAL
HKU-BAL/Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

238 (+1%)
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

90 (+1%)
apache-2.0
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+0.8%)
bsd-3-clause
Last month (new repositories)
no newly created repositories trending in the last month
Last month (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

66,903 (+481)
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

90 (+83)
apache-2.0
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+44)
bsd-3-clause
servierhub
servierhub/top-pharma50

Top open source software from the top 50 pharmaceutical companies

42 (+40)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,063 (+25)
mit
Last month (relative gain)
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

90 (+1,186%)
apache-2.0
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

29 (+12%)
gpl-3.0
rcedgar
rcedgar/usearch12

Open-source usearch

82 (+11%)
gpl-3.0
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+7%)
bsd-3-clause
phonchi
phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

34 (+6%)
Last 12-months (new repositories)
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

90
apache-2.0
rcedgar
rcedgar/usearch12

Open-source usearch

82
gpl-3.0
lujiarui
lujiarui/Str2Str

Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)

65
mit
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

49
mit
servierhub
servierhub/top-pharma50

Top open source software from the top 50 pharmaceutical companies

42
Last 12-months (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

66,903 (+6,198)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,063 (+377)
mit
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

654 (+174)
bsd-3-clause
eselkin
eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

725 (+152)
cc0-1.0
a-r-j
a-r-j/graphein

Protein Graph Library

1,022 (+124)
mit
Last 12-months (relative gain)
QizhiPei
QizhiPei/FABind

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

107 (+1,429%)
mit
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

49 (+717%)
mit
rcedgar
rcedgar/usearch12

Open-source usearch

82 (+382%)
gpl-3.0
asapdiscovery
asapdiscovery/asapdiscovery

Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium

30 (+233%)
mit
phonchi
phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

34 (+162%)