Statistics for topic computational-biology

RepositoryStats tracks 584,797 Github repositories, of these 89 are tagged with the computational-biology topic. The most common primary language for repositories using this topic is Python (46).

Stargazers over time for topic computational-biology

Most starred repositories for topic computational-biology (view more)

Developer-Y
cs-video-courses Developer-Y
9.1k
67.3k
unknown
1.9k
List of Computer Science courses with video lectures.
systems robotics security databases algorithms deep-learning bioinformatics computer-vision web-development computer-science database-systems embedded-systems machine-learning quantum-computing computational-biology computational-physics computer-architecture reinforcement-learning
Created 2016-10-21
385 commits to master branch, last one 2 months ago
gcorso
DiffDock gcorso
263
1.1k
mit
18
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
binding docking equivariance diffusion-models machine-learning score-based-models computational-biology non-euclidean-geometry
Created 2022-10-04
93 commits to main branch, last one 2 months ago
a-r-j
graphein a-r-j
132
1.0k
mit
18
Protein Graph Library
dgl rna python protein pytorch interactome ppi-networks deep-learning interactomics bioinformatics drug-discovery protein-design protein-data-bank protein-structure pytorch-geometric structural-biology computational-biology graph-neural-networks geometric-deep-learning gene-regulatory-networks
Created 2019-08-28
807 commits to master branch, last one 28 days ago
scikit-bio
scikit-bio scikit-bio
269
896
bsd-3-clause
52
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
bioinformatics computational-biology
Created 2013-12-13
5,820 commits to main branch, last one 2 days ago
3dmol
3Dmol.js 3dmol
195
813
other
30
WebGL accelerated JavaScript molecular graphics library
molecular-graphics molecular-modeling computational-biology computational-chemistry
Created 2014-10-02
3,137 commits to master branch, last one a day ago
opensim-org
opensim-core opensim-org
322
798
apache-2.0
58
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
science simulation engineering biomechanics computational-biology computational-science biological-simulations musculoskeletal-models
Created 2014-06-12
16,133 commits to main branch, last one a day ago

Trending repositories for topic computational-biology (view more)

Last 3 days (new repositories)
no newly created repositories trending in the last 3 days
Last 3 days (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,269 (+31)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,098 (+7)
mit
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

39 (+3)
gpl-3.0
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

681 (+3)
bsd-3-clause
DrugBud-Suite
DrugBud-Suite/CADD_Vault

No description

28 (+1)
cc-by-4.0
Last 3 days (relative gain)
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

39 (+8%)
gpl-3.0
DrugBud-Suite
DrugBud-Suite/CADD_Vault

No description

28 (+4%)
cc-by-4.0
burkesquires
burkesquires/python_biologist

Python Programming for Biologists

124 (+0.8%)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,098 (+0.6%)
mit
broadinstitute
broadinstitute/Tangram

Spatial alignment of single cell transcriptomic data.

258 (+0.4%)
bsd-3-clause
Last week (new repositories)
no newly created repositories trending in the last week
Last week (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,269 (+74)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,098 (+10)
mit
a-r-j
a-r-j/graphein

Protein Graph Library

1,042 (+7)
mit
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

39 (+4)
gpl-3.0
rcedgar
rcedgar/usearch12

Open-source usearch

100 (+3)
gpl-3.0
Last week (relative gain)
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

39 (+11%)
gpl-3.0
DrugBud-Suite
DrugBud-Suite/CADD_Vault

No description

28 (+8%)
cc-by-4.0
rcedgar
rcedgar/usearch12

Open-source usearch

100 (+3%)
gpl-3.0
phonchi
phonchi/Computational-CryoET

A curated list of awesome computational cryo-ET methods.

38 (+3%)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,098 (+0.9%)
mit
Last month (new repositories)
no newly created repositories trending in the last month
Last month (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,269 (+272)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,098 (+25)
mit
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

241 (+17)
mit
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

681 (+16)
bsd-3-clause
rcedgar
rcedgar/usearch12

Open-source usearch

100 (+13)
gpl-3.0
Last month (relative gain)
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

39 (+22%)
gpl-3.0
DrugBud-Suite
DrugBud-Suite/CADD_Vault

No description

28 (+22%)
cc-by-4.0
rcedgar
rcedgar/usearch12

Open-source usearch

100 (+15%)
gpl-3.0
cbalbin-bio
cbalbin-bio/pymol-color-alphafold

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

71 (+11%)
mit
OpenBioSim
OpenBioSim/biosimspace

An interoperable Python framework for biomolecular simulation.

82 (+11%)
gpl-3.0
Last 12-months (new repositories)
Adibvafa
Adibvafa/CodonTransformer

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

103
apache-2.0
rcedgar
rcedgar/usearch12

Open-source usearch

100
gpl-3.0
lujiarui
lujiarui/Str2Str

Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)

65
mit
servierhub
servierhub/top-pharma50

Top open source software from the top 50 pharmaceutical companies

47
rcedgar
rcedgar/reseek

Protein structure alignment and search algorithm

39
gpl-3.0
Last 12-months (absolute gain)
Developer-Y
Developer-Y/cs-video-courses

List of Computer Science courses with video lectures.

67,269 (+5,479)
gcorso
gcorso/DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

1,098 (+375)
mit
biotite-dev
biotite-dev/biotite

A comprehensive library for computational molecular biology

681 (+183)
bsd-3-clause
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

241 (+179)
mit
eselkin
eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

740 (+144)
cc0-1.0
Last 12-months (relative gain)
Dunni3
Dunni3/FlowMol

Mixed continous/categorical flow-matching model for de novo molecule generation.

54 (+800%)
mit
rcedgar
rcedgar/usearch12

Open-source usearch

100 (+488%)
gpl-3.0
QizhiPei
QizhiPei/BioT5

BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)

96 (+336%)
mit
QizhiPei
QizhiPei/FABind

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

114 (+322%)
mit
OATML-Markslab
OATML-Markslab/ProteinGym

Official repository for the ProteinGym benchmarks

241 (+289%)
mit