10 results found Sort:

a-r-j
graphein a-r-j
125
990
mit
19
Protein Graph Library
dgl rna python protein pytorch interactome ppi-networks deep-learning interactomics bioinformatics drug-discovery protein-design protein-data-bank protein-structure pytorch-geometric structural-biology computational-biology graph-neural-networks geometric-deep-learning gene-regulatory-networks
Created 2019-08-28
796 commits to master branch, last one 12 days ago
BradyAJohnston
MolecularNodes BradyAJohnston
81
809
mit
16
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
pdb sciart blender protein molecule proteins biochemistry blender-addon visualisation geometry-nodes protein-data-bank protein-structure molecular-modeling structural-biology protein-visualization
Created 2022-04-25
1,516 commits to main branch, last one 4 days ago
biojava
biojava biojava
379
581
lgpl-2.1
79
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
pdb java genomics bioinformatics parser-library protein-data-bank protein-sequences protein-structure sequence-alignment structure-alignment protein-modification structural-bioinformatics
Created 2013-04-03
6,829 commits to master branch, last one 9 days ago
williamgilpin
pypdb williamgilpin
77
300
mit
20
A Python API for the RCSB Protein Data Bank (PDB)
pdb blast proteins proteomics protein-data-bank protein-sequences protein-structure
Created 2015-05-13
176 commits to master branch, last one 16 days ago
flatironinstitute
DeepFRI flatironinstitute
69
280
bsd-3-clause
10
Deep functional residue identification
tensorflow deep-learning gene-ontology machine-learning protein-data-bank class-activation-maps graph-convolutional-networks
Created 2019-10-24
143 commits to master branch, last one about a year ago
fogleman
ribbon fogleman
24
243
mit
11
Ribbon diagrams of proteins in #golang.
3d go protein chemistry biochemistry protein-data-bank
Created 2017-02-21
17 commits to master branch, last one 4 years ago
adaptyvbio
ProteinFlow adaptyvbio
8
173
bsd-3-clause
7
Versatile computational pipeline for processing protein structure data for deep learning applications.
dataset deep-learning bioinformatics protein-design protein-data-bank protein-structure
Created 2023-02-15
1,309 commits to main branch, last one 3 months ago
sbl-sdsc
mmtf-pyspark sbl-sdsc
27
67
apache-2.0
8
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
binder jupyter pyspark big-data apache-spark jupyter-notebook machine-learning protein-data-bank protein-sequences protein-structure scientific-computing protein-ligand-interactions protein-protein-interaction
Created 2017-05-11
1,752 commits to master branch, last one about a year ago
sbl-sdsc
mmtf-workshop-2018 sbl-sdsc
34
58
apache-2.0
5
Structural Bioinformatics Training Workshop & Hackathon 2018
binder jupyter pyspark big-data hackathon apache-spark 3d-visualization jupyter-notebook machine-learning protein-data-bank workshop-materials protein-ligand-interactions protein-protein-interaction
Created 2018-04-23
137 commits to master branch, last one 2 years ago
nvelden
NGLVieweR nvelden
4
43
other
2
Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
r ngl pdb shiny nglviewer protein-data-bank shiny-applications
Created 2021-02-20
62 commits to master branch, last one 11 months ago