10 results found Sort:

a-r-j
graphein a-r-j
132
1.0k
mit
18
Protein Graph Library
dgl rna python protein pytorch interactome ppi-networks deep-learning interactomics bioinformatics drug-discovery protein-design protein-data-bank protein-structure pytorch-geometric structural-biology computational-biology graph-neural-networks geometric-deep-learning gene-regulatory-networks
Created 2019-08-28
807 commits to master branch, last one about a month ago
BradyAJohnston
MolecularNodes BradyAJohnston
87
916
gpl-3.0
19
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
pdb sciart blender protein molecule proteins molecular biochemistry blender-addon visualisation geometry-nodes protein-data-bank protein-structure molecular-dynamics molecular-graphics molecular-modeling structural-biology protein-visualization
Created 2022-04-25
1,739 commits to main branch, last one 12 days ago
biojava
biojava biojava
388
594
lgpl-2.1
78
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
pdb java genomics bioinformatics parser-library protein-data-bank protein-sequences protein-structure sequence-alignment structure-alignment protein-modification structural-bioinformatics
Created 2013-04-03
6,856 commits to master branch, last one 2 months ago
williamgilpin
pypdb williamgilpin
75
314
mit
20
A Python API for the RCSB Protein Data Bank (PDB)
pdb blast proteins proteomics protein-data-bank protein-sequences protein-structure
Created 2015-05-13
181 commits to master branch, last one 3 months ago
flatironinstitute
DeepFRI flatironinstitute
77
304
bsd-3-clause
10
Deep functional residue identification
tensorflow deep-learning gene-ontology machine-learning protein-data-bank class-activation-maps graph-convolutional-networks
Created 2019-10-24
143 commits to master branch, last one about a year ago
fogleman
ribbon fogleman
24
243
mit
11
Ribbon diagrams of proteins in #golang.
3d go protein chemistry biochemistry protein-data-bank
Created 2017-02-21
17 commits to master branch, last one 5 years ago
adaptyvbio
ProteinFlow adaptyvbio
17
242
bsd-3-clause
8
Versatile computational pipeline for processing protein structure data for deep learning applications.
dataset deep-learning bioinformatics protein-design protein-data-bank protein-structure
Created 2023-02-15
1,309 commits to main branch, last one 9 months ago
sbl-sdsc
mmtf-pyspark sbl-sdsc
27
68
apache-2.0
8
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
binder jupyter pyspark big-data apache-spark jupyter-notebook machine-learning protein-data-bank protein-sequences protein-structure scientific-computing protein-ligand-interactions protein-protein-interaction
Created 2017-05-11
1,752 commits to master branch, last one about a year ago
sbl-sdsc
mmtf-workshop-2018 sbl-sdsc
34
58
apache-2.0
5
Structural Bioinformatics Training Workshop & Hackathon 2018
binder jupyter pyspark big-data hackathon apache-spark 3d-visualization jupyter-notebook machine-learning protein-data-bank workshop-materials protein-ligand-interactions protein-protein-interaction
Created 2018-04-23
137 commits to master branch, last one 2 years ago
nvelden
NGLVieweR nvelden
3
45
other
2
Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
r ngl pdb shiny nglviewer protein-data-bank shiny-applications
Created 2021-02-20
80 commits to master branch, last one 13 hours ago