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The codebase of the OpenMS project
Created
2014-01-09
33,794 commits to develop branch, last one 5 days ago
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created
2014-09-26
532 commits to bloody branch, last one 4 years ago
A Python API for the RCSB Protein Data Bank (PDB)
Created
2015-05-13
176 commits to master branch, last one about a month ago
A collection of Galaxy-related training material
Created
2015-06-29
25,834 commits to main branch, last one a day ago
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
dna
docking
protein
peptides
chemistry
proteomics
bioinformatics
protein-design
protein-docking
molecular-biology
protein-structure
structural-biology
swarm-intelligence
bioinformatics-tool
molecular-structures
artificial-intelligence
protein-dna-interactions
structural-bioinformatics
glowworm-swarm-optimization
protein-protein-interaction
Created
2019-09-27
488 commits to master branch, last one 5 months ago
Proteomics search & quantification so fast that it feels like magic
Created
2022-07-18
254 commits to master branch, last one about a month ago
Various teaching material
Created
2013-05-10
1,821 commits to master branch, last one 3 years ago
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Created
2017-05-19
4,467 commits to develop branch, last one a day ago
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Created
2020-03-03
1,969 commits to master branch, last one 2 months ago
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Created
2016-03-22
84 commits to master branch, last one about a year ago
sensitive and precise assembly of short sequencing reads
Created
2018-01-19
3,797 commits to master branch, last one 17 days ago
Base Classes and Functions for Mass Spectrometry and Proteomics
Created
2010-10-02
4,018 commits to master branch, last one about a month ago
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
Created
2017-02-27
1,795 commits to master branch, last one about a month ago
Deep learning framework for proteomics
Created
2021-10-01
935 commits to main branch, last one 29 days ago
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Created
2019-01-31
505 commits to master branch, last one 9 days ago
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Created
2018-05-02
93 commits to master branch, last one about a year ago
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Ol...
Created
2019-11-06
1,382 commits to main branch, last one 2 days ago
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
Created
2012-09-10
614 commits to main branch, last one about a year ago
The Proteomics Experimental Design file format: Standard for experimental design annotation
Created
2018-06-12
2,154 commits to master branch, last one 7 months ago
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
Created
2020-10-27
741 commits to master branch, last one 5 months ago
Toolbox for including enzyme constraints on a genome-scale model.
Created
2016-06-15
1,163 commits to main branch, last one 22 days ago
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Created
2021-03-21
175 commits to main branch, last one about a year ago
Picotti lab data analysis package.
Created
2020-06-26
868 commits to master branch, last one 23 days ago
A deep learning toolkit for mass spectrometry
Created
2021-03-30
83 commits to main branch, last one about a month ago
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
Created
2020-03-13
413 commits to master branch, last one 5 days ago
Prize-Collecting Steiner Forests for Interactomes
Created
2017-02-08
185 commits to master branch, last one 5 months ago
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
Created
2022-04-07
763 commits to main branch, last one 26 days ago
Deep (Transfer) Learning for Peptide Retention Time Prediction
Created
2016-11-07
267 commits to master branch, last one 2 years ago
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
Created
2019-02-09
508 commits to master branch, last one 11 days ago
Matrix dissimilarity from the differences of Moments and sparsity
Created
2023-11-25
24 commits to main branch, last one 4 months ago