Search Results - RepositoryStats

318

479

other

30

The codebase of the OpenMS project

linux macos openms ms-data windows analyses algorithms proteomics c-plus-plus 3-clause-bsd metabolomics hacktoberfest mass-spectrometry

Created 2014-01-09

34,063 commits to develop branch, last one 4 days ago

pypdb williamgilpin

75

316

mit

20

A Python API for the RCSB Protein Data Bank (PDB)

pdb blast proteins proteomics protein-data-bank protein-sequences protein-structure

Created 2015-05-13

181 commits to master branch, last one 4 months ago

pyGeno tariqdaouda

50

313

apache-2.0

25

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Created 2014-09-26

532 commits to bloody branch, last one 4 years ago

training-material galaxyproject

922

312

mit

51

A collection of Galaxy-related training material

ngs rnaseq chip-seq training tutorial materials usegalaxy proteomics metagenomics hacktoberfest

Created 2015-06-29

29,179 commits to main branch, last one a day ago

lightdock lightdock

42

312

gpl-3.0

12

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Created 2019-09-27

488 commits to master branch, last one 11 months ago

sage lazear

46

232

mit

15

Proteomics search & quantification so fast that it feels like magic

proteomics bioinformatics mass-spectrometry

Created 2022-07-18

274 commits to master branch, last one 8 days ago

FragPipe Nesvilab

39

212

other

23

A cross-platform proteomics data analysis suite

gui proteomics mass-spectrometry command-line-interface isobaric-quantification label-free-quantification data-dependent-acquisition data-independent-acquisition

Created 2017-05-19

4,646 commits to develop branch, last one a day ago

TeachingMaterial lgatto

81

179

unknown

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Various teaching material

r make makefile proteomics statistics data-analysis vectorisation visualisation oo-programming teaching-materials programming-tutorial

Created 2013-05-10

1,821 commits to master branch, last one 3 years ago

alphapept MannLabs

30

170

apache-2.0

10

A modular, python-based framework for mass spectrometry. Powered by nbdev.

proteomics bioinformatics mass-spectrometry alphapept-ecosystem

Created 2020-03-03

1,969 commits to master branch, last one 8 months ago

FAMSA refresh-bio

25

152

gpl-3.0

8

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

pfam guide-tree proteomics bioinformatics sequence-similarity longest-common-subsequence multiple-sequence-alignment

Created 2016-03-22

94 commits to master branch, last one 3 months ago

plass soedinglab

14

151

gpl-3.0

10

sensitive and precise assembly of short sequencing reads

proteins opensource proteomics metagenomics bioinformatics sequence-assembler metatranscriptomics

Created 2018-01-19

3,798 commits to master branch, last one 2 months ago

MSnbase lgatto

46

127

unknown

14

Base Classes and Functions for Mass Spectrometry and Proteomics

r proteomics bioconductor visualisation bioinformatics proteomics-data mass-spectrometry

Created 2010-10-02

4,037 commits to master branch, last one about a month ago

alphapeptdeep MannLabs

24

113

apache-2.0

8

Deep learning framework for proteomics

hla python proteomics deep-learning machine-learning

Created 2021-10-01

1,064 commits to main branch, last one 11 days ago

philosopher Nesvilab

20

112

gpl-3.0

16

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

go ms-data proteomics data-analysis bioinformatics mass-spectrometry

Created 2017-02-27

1,796 commits to master branch, last one 3 months ago

MSFragger Nesvilab

7

110

unknown

14

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

proteomics bioinformatics database-search mass-spectrometry

Created 2019-01-31

505 commits to master branch, last one 6 months ago

OlinkRPackage Olink-Proteomics

23

96

agpl-3.0

13

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Ol...

r olink rstats proteomics proteomics-data-analysis

Created 2019-11-06

1,822 commits to main branch, last one 29 days ago

PyFeat mrzResearchArena

30

93

gpl-3.0

7

A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

genomics proteomics bioinformatics computational-biology

Created 2018-05-02

93 commits to master branch, last one 2 years ago

RforProteomics lgatto

34

89

unknown

16

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

r tutorial proteomics bioconductor proteomics-data mass-spectrometry bioconductor-packages

Created 2012-09-10

614 commits to main branch, last one about a year ago

proteomics-sample-metadata bigbio

107

79

gpl-2.0

21

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

sdrf mage-tab metadata multiomics proteomics msrun-metadata pride-metadata proteomexchange sdrf-proteomics proteomics-datasets proteomics-community proteomics-experiments

Created 2018-06-12

2,321 commits to master branch, last one 2 months ago

alphamap MannLabs

18

77

apache-2.0

10

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

gui python proteomics peptide-level visualization mass-spectrometry

Created 2020-10-27

802 commits to master branch, last one 4 months ago

depthcharge wfondrie

19

68

apache-2.0

10

A deep learning toolkit for mass spectrometry

pytorch framework proteomics metabolomics deep-learning mass-spectrometry

Created 2021-03-30

83 commits to main branch, last one 7 months ago

awesome-structural-bioinformatics twoXes

10

68

unknown

2

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.