21 results found Sort:

280
1.0k
bsd-3-clause
31
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Created 2020-03-19
529 commits to master branch, last one 8 months ago
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
Created 2024-01-24
9 commits to main branch, last one 8 months ago
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
Created 2022-02-04
20 commits to main branch, last one 2 years ago
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
Created 2021-11-07
119 commits to main branch, last one 5 months ago
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
Created 2021-12-18
51 commits to main branch, last one about a year ago
25
143
apache-2.0
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This repository has been integrated in https://github.com/DeepRank/deeprank2
This repository has been archived (exclude archived)
Created 2017-09-12
1,129 commits to master branch, last one about a year ago
SaprotHub: Making Protein Modeling Accessible to All Biologists
Created 2024-05-02
564 commits to main branch, last one 22 hours ago
Dataset and package for working with protein-protein interactions in 3D
Created 2023-10-16
111 commits to main branch, last one 8 days ago
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other
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Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!
Created 2025-01-14
30 commits to main branch, last one 22 hours ago
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68
apache-2.0
7
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Created 2017-05-11
1,752 commits to master branch, last one about a year ago
Structural Bioinformatics Training Workshop & Hackathon 2018
Created 2018-04-23
137 commits to master branch, last one 2 years ago
An ultra-high-performance protein-protein docking for heterogeneous supercomputers
Created 2016-01-11
95 commits to master branch, last one about a year ago
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
Created 2023-07-06
4 commits to main branch, last one about a year ago
Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning"
Created 2024-05-06
9 commits to main branch, last one 4 months ago
Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
Created 2024-05-28
24 commits to main branch, last one 4 months ago
Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
Created 2023-08-07
20 commits to main branch, last one about a year ago
Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
Created 2024-05-24
55 commits to main branch, last one about a month ago
Graph Network for protein-protein interface including language model features
Created 2023-06-15
109 commits to main branch, last one 10 months ago