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CellChat sqjin

158

680

gpl-3.0

14

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

microenvironment single-cell-analysis cell-cell-interaction cell-cell-communication

This repository has been archived (exclude archived)

Created 2020-04-27

270 commits to master branch, last one about a year ago

CellChat jinworks

62

371

gpl-3.0

2

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

microenvironment single-cell-analysis cell-cell-interaction cell-cell-communication spatial-transcriptomics

Created 2023-11-05

112 commits to main branch, last one 3 months ago

MAPE-PPI LirongWu

45

257

mit

2

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

codebook vocabulary ppi-networks masked-modeling microenvironment protein-embedding protein-protein-interaction protein-representation-learning

Created 2024-01-24

9 commits to main branch, last one 9 months ago

ecotyper digitalcytometry

42

197

other

3

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

tumor single-cell bulk-rna-seq deconvolution microenvironment

Created 2021-06-08

74 commits to master branch, last one about a year ago

SCEVAN AntonioDeFalco

25

100

gpl-3.0

4

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...

scrna-seq aneuploidy copynumber single-cell scrna-pipeline clonal-analysis tumor-evolution clonal-evolution microenvironment scrna-seq-analysis tumor-heterogeneity tumor-classification copy-number-variation subclonal-deconvolution subclone-identification

Created 2021-07-05

239 commits to main branch, last one 14 hours ago