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awesome-protein-representation-learning LirongWu

66

569

mit

20

Awesome Protein Representation Learning

protein-modeling protein-embedding protein-sequences representation-learning protein-representation-learning

Created 2022-10-05

62 commits to main branch, last one 2 months ago

protein-sequence-embedding-iclr2019 tbepler

74

253

other

11

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

pytorch deep-learning language-model protein-modeling protein-sequence protein-embedding protein-structure recurrent-neural-networks protein-representation-learning

Created 2019-02-22

7 commits to master branch, last one 3 years ago

MAPE-PPI LirongWu

33

184

mit

1

Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

codebook vocabulary ppi-networks masked-modeling microenvironment protein-embedding protein-protein-interaction protein-representation-learning

Created 2024-01-24

9 commits to main branch, last one 9 days ago

prose tbepler

19

94

other

3

Multi-task and masked language model-based protein sequence embedding models.

deep-learning language-model protein-embedding protein-sequences sequence-embedding representation-learning

Created 2021-05-20

2 commits to main branch, last one 3 years ago